Rorug03G0042700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011413
Physical Location & Seq
Forward (+)
3301900 .. 3304840
2941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0042700.1

Sequence Viewer

Length: 459 bp
ATGGCGAAGGGCGTTGCTGTACTTGGCTCCAGTGAGGGTGTTAAAGGAACTATCCTCTTCACACAAGAGGGAGATGGCCCAACTACTGTGACTGGAAACATTTCTGGCCTCAAGCCTGGGCTTCATGGTTTTCATGTTCATGCTCTTGGTGACACAACAAACGGTTGCATGTCAACTGGACCGCACTTCAATCCTGCTGGCAAAGAGCATGGTGCTCCTGAAGATGAGAGTCGTCATGCTGGTGATCTTGGAAATATTACTGTTGGGGATGATGGAACTGCTACCTTCACAATTGTTGACAAGCAGATTCCTCTCACTGGACCACACTCTATCATTGGTAGGGCGGTTGTTGTCCATGGAGACCCTGATGACCTTGGCAAGGGTGGACATGAGCTTAGCAAATCCACTGGAAATGCTGGAGGCAGGATAGCTTGTGGTATTATTGGTCTCCAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

15.18

Weight (kDa)

5.77

Isoelectric Point (pI)

23.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 14 - 148 2.2e-52 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 182, 344
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 317, 379
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 394, 431
AluI AGCT 2 cut(s) 394, 431
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 354, 452
AoxI GGCC 2 cut(s) 76, 106
Asp700I GAANNNNTTC 1 cut(s) 100
AspS9I GGNCC 3 cut(s) 77, 179, 320
AsuHPI GGTGA 2 cut(s) 161, 254
AvaII GGWCC 2 cut(s) 179, 320
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 2 cut(s) 68, 266
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 354, 452
BlpI GCTNAGC 1 cut(s) 395
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 179, 320
BmgT120I GGNCC 3 cut(s) 77, 179, 320
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 117
BpmI CTGGAG 2 cut(s) 13, 438
Bpu1102I GCTNAGC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 95
BsaI GGTCTC 2 cut(s) 354, 452
BsaJI CCNNGG 4 cut(s) 116, 355, 373, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 379
Bse1I ACTGG 5 cut(s) 30, 97, 181, 322, 412
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 116, 355, 373, 451
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 317, 379
BseNI ACTGG 5 cut(s) 30, 97, 181, 322, 412
BshFI GGCC 2 cut(s) 78, 108
BsiHKAI GWGCWC 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 317, 379
BsmAI GTCTC 2 cut(s) 354, 452
BsnI GGCC 2 cut(s) 78, 108
Bso31I GGTCTC 2 cut(s) 354, 452
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 244
Bsp1720I GCTNAGC 1 cut(s) 395
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 2 cut(s) 182, 344
BspANI GGCC 2 cut(s) 78, 108
BspLI GGNNCC 1 cut(s) 28
BspTNI GGTCTC 2 cut(s) 354, 452
BsrI ACTGG 5 cut(s) 30, 97, 181, 322, 412
BssECI CCNNGG 4 cut(s) 116, 355, 373, 451
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 3 cut(s) 355, 373, 451
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 88, 164, 262
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 355
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 2 cut(s) 354, 452
BstMBI GATC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 115
BsuRI GGCC 2 cut(s) 78, 108
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 3 cut(s) 37, 315, 405
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 3 cut(s) 77, 179, 320
Csp6I GTAC 1 cut(s) 20
CviAII CATG 8 cut(s) 125, 134, 140, 169, 209, 236, 356, 389
CviJI RGCY 7 cut(s) 27, 78, 108, 115, 121, 394, 431
CviKI_1 RGCY 7 cut(s) 27, 78, 108, 115, 121, 394, 431
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 395
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 3 cut(s) 355, 373, 451
Eco31I GGTCTC 2 cut(s) 354, 452
Eco47I GGWCC 2 cut(s) 179, 320
Eco57I CTGAAG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 3 cut(s) 355, 373, 451
ErhI CCWWGG 3 cut(s) 355, 373, 451
FaeI CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
FaiI YATR 8 cut(s) 126, 135, 141, 170, 210, 237, 357, 390
FatI CATG 8 cut(s) 124, 133, 139, 168, 208, 235, 355, 388
FokI GGATG 1 cut(s) 281
GsuI CTGGAG 2 cut(s) 13, 438
HaeIII GGCC 2 cut(s) 78, 108
Hin1II CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
HincII GTYRAC 2 cut(s) 174, 298
HindII GTYRAC 2 cut(s) 174, 298
HinfI GANTC 2 cut(s) 229, 307
HphI GGTGA 2 cut(s) 161, 254
Hpy166II GTNNAC 3 cut(s) 174, 298, 386
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 3 cut(s) 174, 298, 386
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 3 cut(s) 88, 164, 262
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 32, 220
MaeIII GTNAC 2 cut(s) 88, 149
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 2 cut(s) 49, 233
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 6 cut(s) 28, 61, 65, 119, 321, 413
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 2 cut(s) 138, 240
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 355
NdeII GATC 1 cut(s) 244
NlaIII CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 2 cut(s) 88, 149
NspI RCATGY 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 307
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 3 cut(s) 77, 179, 320
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 138, 240
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 3 cut(s) 77, 179, 320
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 217
SetI ASST 4 cut(s) 287, 375, 396, 433
SinI GGWCC 2 cut(s) 179, 320
SmiMI CAYNNNNRTG 2 cut(s) 138, 240
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 291
SsiI CCGC 2 cut(s) 182, 344
SspI AATATT 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 3 cut(s) 355, 373, 451
TaaI ACNGT 3 cut(s) 88, 164, 262
TasI AATT 1 cut(s) 291
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 3 cut(s) 37, 322, 412
TseFI GTSAC 2 cut(s) 88, 149
Tsp45I GTSAC 2 cut(s) 88, 149
TspDTI ATGAA 3 cut(s) 113, 122, 128
TspRI CASTG 3 cut(s) 37, 322, 412
VpaK11BI GGWCC 2 cut(s) 179, 320
XagI CCTNNNNNAGG 1 cut(s) 377
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.