Rmu_sc0021028.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021028.1
OG0011413
Physical Location & Seq
Reverse (-)
15120 .. 15923
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021028.1_g000003.1.cds

Sequence Viewer

Length: 726 bp
atggacagaactagttttctggcggtgttcttattgctcttcatcgtttccgatgtcaccaatgcttcgatgctcaccaagcatagatttttgatcggtgatcctccgaagggcaattcggacaatcccacattaccgggtaaggattctccggtggtgagtccgcctccgccttctaaacctgatcctgatcctgatcctaatcctaatcctaagccagttgatgatgggaagaagaaaacgggctctgccccaccctccaagacgccggagccgaaaggttcaaataacagtactaaaccggctccggtaggtccaccaactgataccggtggtgggaagaataaccaaacacagaagcaggatccaaatcctgtgcagaagccgaaggagaaaccaactccagagcctgaacagaagccgaaggagaatccaactctggagtctgagcagaggccgaaggagaatccaactccagagactggcaagacaccggaagaggatccaagtgcaaagactccagaaatagagaagactaagaataaaagtgacaatgtgactaatacatcgaatgtgaaaaaagaaagctgcgatggggcaatcaagaagtgcagcaatacggatatggttgcctgcattaagagcttcaataggggtaagtcacattactgctggcacttttgggctgacatttatttcttgttaaggtattgtgcattcaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.37

Weight (kDa)

8.81

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51580 AT3G51580
fragaria_vesca FvH4_6g09850
malus_domestica MD04G1174800.v1.1 MD12G1188500.v1.1
prunus_persica Prupe.6G293800_v2.0.a1
pyrus_communis pycom04g15420 pycom12g17610
rosa_chinensis RchiOBHm_Chr3g0460451
rosa_laevigata RLG00000025010
rosa_multiflora Rmu_sc0004267.1_g000009 Rmu_sc0021028.1_g000003
rosa_roxburghii Rroxscaffold_6G00419470
rosa_rugosa Rorug03G0042600 Rorug03G0042700
rosa_samantha Rh3AG100800 Rh3BG104800 Rh3CG106600 Rh3DG106100
rosa_wichuraiana Rw3G008580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 482
AciI CCGC 3 cut(s) 23, 164, 170
AclWI GGATC 8 cut(s) 95, 179, 185, 191, 359, 372, 497, 510
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 110, 336, 482
AgeI ACCGGT 1 cut(s) 329
AgsI TTSAA 3 cut(s) 285, 649, 721
AhlI ACTAGT 1 cut(s) 11
AluBI AGCT 2 cut(s) 588, 645
AluI AGCT 2 cut(s) 588, 645
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 8 cut(s) 95, 179, 185, 191, 359, 372, 497, 510
AlwNI CAGNNNCTG 2 cut(s) 410, 482
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 588, 612
AsiGI ACCGGT 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 4 cut(s) 49, 67, 110, 169
AvaII GGWCC 1 cut(s) 314
BamHI GGATCC 2 cut(s) 364, 502
BanII GRGCYC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 575, 624
BccI CCATC 2 cut(s) 221, 587
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 473
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 589, 613
BlsI GCNGC 2 cut(s) 590, 614
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 4 cut(s) 273, 306, 366, 504
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 539
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpmI CTGGAG 4 cut(s) 387, 459, 461, 504
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 138
BsaBI GATNNNNATC 4 cut(s) 189, 195, 201, 369
BsaHI GRCGYC 1 cut(s) 266
BsaWI WCCGGW 4 cut(s) 151, 307, 329, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 336, 482
Bse118I RCCGGY 2 cut(s) 301, 329
Bse1I ACTGG 2 cut(s) 218, 487
Bse8I GATNNNNATC 4 cut(s) 189, 195, 201, 369
BseJI GATNNNNATC 4 cut(s) 189, 195, 201, 369
BseLI CCNNNNNNNGG 3 cut(s) 110, 336, 482
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 218, 487
BseXI GCAGC 2 cut(s) 575, 624
BsgI GTGCAG 2 cut(s) 398, 631
BshFI GGCC 1 cut(s) 457
BshTI ACCGGT 1 cut(s) 329
BsiSI CCGG 7 cut(s) 137, 152, 269, 302, 308, 330, 494
BslI CCNNNNNNNGG 3 cut(s) 110, 336, 482
BsmAI GTCTC 1 cut(s) 473
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 7 cut(s) 93, 100, 184, 190, 196, 364, 502
BspACI CCGC 3 cut(s) 23, 164, 170
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 4 cut(s) 273, 306, 366, 504
BspPI GGATC 8 cut(s) 95, 179, 185, 191, 359, 372, 497, 510
BspQI GCTCTTC 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 301, 329
BsrI ACTGG 2 cut(s) 218, 487
BssAI RCCGGY 2 cut(s) 301, 329
BssMI GATC 7 cut(s) 93, 100, 184, 190, 196, 364, 502
BssNI GRCGYC 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 2 cut(s) 44, 492
BstACI GRCGYC 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 634, 674
BstDEI CTNAG 3 cut(s) 213, 447, 537
BstKTI GATC 7 cut(s) 96, 103, 187, 193, 199, 367, 505
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 7 cut(s) 93, 100, 184, 190, 196, 364, 502
BstMWI GCNNNNNNNGC 2 cut(s) 79, 642
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 575, 624
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 2 cut(s) 364, 502
BstYI RGATCY 2 cut(s) 364, 502
BsuRI GGCC 1 cut(s) 457
BtgZI GCGATG 1 cut(s) 606
Cac8I GCNNGC 2 cut(s) 634, 674
CaiI CAGNNNCTG 2 cut(s) 410, 482
Cfr10I RCCGGY 2 cut(s) 301, 329
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 294
CspAI ACCGGT 1 cut(s) 329
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 3 cut(s) 213, 447, 537
DpnI GATC 7 cut(s) 95, 102, 186, 192, 198, 366, 504
DpnII GATC 7 cut(s) 93, 100, 184, 190, 196, 364, 502
Eam1104I CTCTTC 2 cut(s) 44, 492
EarI CTCTTC 2 cut(s) 44, 492
EciI GGCGGA 2 cut(s) 153, 159
Eco24I GRGCYC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 248
FaiI YATR 2 cut(s) 84, 626
Fnu4HI GCNGC 2 cut(s) 589, 613
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 589, 613
FspBI CTAG 1 cut(s) 12
GluI GCNGC 2 cut(s) 589, 613
GsuI CTGGAG 4 cut(s) 387, 459, 461, 504
HaeIII GGCC 1 cut(s) 457
HapII CCGG 7 cut(s) 137, 152, 269, 302, 308, 330, 494
HgaI GACGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 266
HinfI GANTC 6 cut(s) 146, 160, 430, 443, 466, 517
HpaII CCGG 7 cut(s) 137, 152, 269, 302, 308, 330, 494
HphI GGTGA 4 cut(s) 49, 67, 110, 169
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 4 cut(s) 52, 108, 121, 448
Hpy188III TCNNGA 7 cut(s) 188, 194, 404, 440, 476, 521, 604
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 5 cut(s) 103, 183, 382, 418, 454
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 5 cut(s) 379, 512, 612, 636, 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 642
HpyF3I CTNAG 3 cut(s) 213, 447, 537
Hsp92I GRCGYC 1 cut(s) 266
Kzo9I GATC 7 cut(s) 93, 100, 184, 190, 196, 364, 502
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 271, 310
Lsp1109I GCAGC 2 cut(s) 575, 624
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 4 cut(s) 55, 548, 556, 660
MalI GATC 7 cut(s) 95, 102, 186, 192, 198, 366, 504
MboI GATC 7 cut(s) 93, 100, 184, 190, 196, 364, 502
MboII GAAGA 6 cut(s) 31, 244, 247, 352, 509, 544
MflI RGATCY 2 cut(s) 364, 502
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 1 cut(s) 115
MlyI GAGTC 3 cut(s) 169, 452, 511
MmeI TCCRAC 2 cut(s) 458, 494
MnlI CCTC 5 cut(s) 114, 177, 268, 447, 493
MseI TTAA 2 cut(s) 639, 704
MspI CCGG 7 cut(s) 137, 152, 269, 302, 308, 330, 494
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 716
MwoI GCNNNNNNNGC 2 cut(s) 79, 642
NciI CCSGG 1 cut(s) 138
NdeII GATC 7 cut(s) 93, 100, 184, 190, 196, 364, 502
NlaIV GGNNCC 4 cut(s) 273, 306, 366, 504
NmuCI GTSAC 4 cut(s) 55, 548, 556, 660
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 3 cut(s) 146, 430, 466
PflMI CCANNNNNTGG 1 cut(s) 482
PinAI ACCGGT 1 cut(s) 329
PkrI GCNGC 2 cut(s) 590, 614
PleI GAGTC 3 cut(s) 168, 451, 511
PpsI GAGTC 3 cut(s) 168, 451, 511
PspN4I GGNNCC 4 cut(s) 273, 306, 366, 504
PspPI GGNCC 1 cut(s) 314
PstNI CAGNNNCTG 2 cut(s) 410, 482
PsuI RGATCY 2 cut(s) 364, 502
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 639, 704
SatI GCNGC 2 cut(s) 589, 613
Sau3AI GATC 7 cut(s) 93, 100, 184, 190, 196, 364, 502
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 1 cut(s) 295
SchI GAGTC 3 cut(s) 169, 452, 511
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 248
SetI ASST 6 cut(s) 184, 283, 316, 590, 647, 710
SfaNI GCATC 1 cut(s) 60
SinI GGWCC 1 cut(s) 314
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 1 cut(s) 115
SsiI CCGC 3 cut(s) 23, 164, 170
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 2 cut(s) 68, 569
TasI AATT 1 cut(s) 115
TatI WGTACW 1 cut(s) 293
TfiI GAWTC 3 cut(s) 146, 430, 466
Tru1I TTAA 2 cut(s) 639, 704
Tru9I TTAA 2 cut(s) 639, 704
TseFI GTSAC 4 cut(s) 55, 548, 556, 660
TseI GCWGC 2 cut(s) 588, 612
Tsp45I GTSAC 4 cut(s) 55, 548, 556, 660
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 635
Van91I CCANNNNNTGG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 314
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.