AT3G52730

Cytochrome b-c1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007798
Physical Location & Seq
Reverse (-)
19542819 .. 19544365
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52730.2

Sequence Viewer

Length: 219 bp
ATGGAGTACGCTGCTCGGAGAAATCAGAAAGGCGCTTTCGAAGGCTTTTACAAACTTATCATGCGCCGTAATTCCGTCTACGTCACTTTCATCATCGCCGGCGCATTTTTCGGTGAACGGGCTGTGGATTACGGTGTTCATAAGCTCTGGGAACGCAACAATGTTGGGAAACGATATGAAGACATCTCTGTGTTGGGTCAAAGGCCAGTAGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

72

Amino Acids

8.45

Weight (kDa)

9.45

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 56 6.9e-18 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AfaI GTAC 1 cut(s) 8
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 3 cut(s) 35, 66, 104
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 39
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 206
BshFI GGCC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 99
BsnI GGCC 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 39
BspANI GGCC 1 cut(s) 205
BspT104I TTCGAA 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 3 cut(s) 35, 66, 104
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 205
BtgZI GCGATG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 3 cut(s) 35, 66, 104
Cfr10I RCCGGY 1 cut(s) 98
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 45, 122, 145, 205
CviKI_1 RGCY 4 cut(s) 45, 122, 145, 205
CviQI GTAC 1 cut(s) 7
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 141, 177
FatI CATG 1 cut(s) 60
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 3 cut(s) 34, 65, 103
GluI GCNGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 1 cut(s) 205
HapII CCGG 1 cut(s) 99
HhaI GCGC 3 cut(s) 35, 66, 104
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 3 cut(s) 33, 64, 102
HinP1I GCGC 3 cut(s) 33, 64, 102
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 79, 116
Hpy188I TCNGA 2 cut(s) 18, 27
Hpy8I GTNNAC 2 cut(s) 79, 116
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 3 cut(s) 33, 64, 102
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 112, 133
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 1 cut(s) 191
MluCI AATT 1 cut(s) 70
MnlI CCTC 1 cut(s) 205
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 1 cut(s) 99
NaeI GCCGGC 1 cut(s) 100
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PdiI GCCGGC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 13
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 188
SatI GCNGC 1 cut(s) 12
SetI ASST 2 cut(s) 84, 147
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 5 cut(s) 27, 73, 111, 131, 160
SgrAI CRCCGGYG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 1 cut(s) 70
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 70
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 79, 128, 192
TspGWI ACGGA 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.