MD16G1126500.v1.1

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0007798
Physical Location & Seq
Forward (+)
9212660 .. 9212860
201 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1126500.v1.1.491

Sequence Viewer

Length: 201 bp
ATGAGCAGCGGAGGCCTATTCGAAGGTCTATACAGGGTCATCATGCGCTATGACTCTGTCTACGTCACCTTCGTCATCACTGGAGCCTTCCTCGGCGAGCAGGCTGTATATTATGGAGTTCATAAGCTGTGGGAGTACAATAATGTTGAGGAACGATATGAAGATATTCCAGTTCTGGGGACAAGGCAATCAGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

67

Amino Acids

7.68

Weight (kDa)

4.91

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 9 - 57 5.2e-14 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AciI CCGC 1 cut(s) 9
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 176
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 1 cut(s) 21
BbvI GCAGC 1 cut(s) 18
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 85
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BpmI CTGGAG 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 85, 170
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 85, 170
BseXI GCAGC 1 cut(s) 18
BshFI GGCC 1 cut(s) 15
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 1 cut(s) 15
Bsp119I TTCGAA 1 cut(s) 21
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 21
BsrI ACTGG 2 cut(s) 85, 170
BssECI CCNNGG 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 98, 102
BstHHI GCGC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 98, 102
CfoI GCGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 43
CviJI RGCY 4 cut(s) 15, 86, 104, 127
CviKI_1 RGCY 4 cut(s) 15, 86, 104, 127
CviQI GTAC 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 15
FaeI CATG 1 cut(s) 46
FaiI YATR 7 cut(s) 31, 44, 51, 109, 114, 123, 159
FaqI GGGAC 1 cut(s) 193
FatI CATG 1 cut(s) 42
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 7
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 15
HhaI GCGC 1 cut(s) 48
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 17, 79, 97
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 5 cut(s) 19, 66, 86, 161, 183
Lsp1109I GCAGC 1 cut(s) 18
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 1 cut(s) 173
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 3 cut(s) 5, 101, 142
MroXI GAANNNNTTC 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 12
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 85
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 21
PceI AGGCCT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 165
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SatI GCNGC 1 cut(s) 7
SchI GAGTC 1 cut(s) 47
SetI ASST 4 cut(s) 28, 66, 71, 129
SfuI TTCGAA 1 cut(s) 21
SgeI CNNG 9 cut(s) 46, 55, 93, 104, 109, 113, 182, 188, 195
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 15
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 21
TatI WGTACW 1 cut(s) 135
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 110, 174
TspRI CASTG 1 cut(s) 85
Tth111I GACNNNGTC 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.