Prupe.1G506800_v2.0.a1

Cytochrome b-c1 complex subunit 9-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
41837589 .. 41839811
2223 bp
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UTR
Exon/CDS
Intron
Prupe.1G506800.1

Sequence Viewer

Length: 219 bp
ATGGATTCAGCAGCTCGACGAACCAGTGGAGGCGTATTCGAAGGGCTTTACAGGGTCATTATGCGCCGTAACTCCGTCTACGTCACATTCGTCATCGCCGGCGCTTTCCTCGGTGAGCGGGCCGTGGATTATGGAGTTCATAAGTTGTGGGAGTACAACAATGTTGGGAAAAGATACGAAGACATTTCAGTTTTGGGGCAAAGGCCATCGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

8.19

Weight (kDa)

8.09

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 78
AciI CCGC 1 cut(s) 118
AfaI GTAC 1 cut(s) 155
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AoxI GGCC 2 cut(s) 120, 203
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 2 cut(s) 66, 104
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 125
AsuII TTCGAA 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 214
BceAI ACGGC 2 cut(s) 51, 107
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 109, 123
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 109, 123
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 2 cut(s) 122, 205
BsiSI CCGG 1 cut(s) 99
BsnI GGCC 2 cut(s) 122, 205
Bsp119I TTCGAA 1 cut(s) 39
BspACI CCGC 1 cut(s) 118
BspANI GGCC 2 cut(s) 122, 205
BspT104I TTCGAA 1 cut(s) 39
BsrBI CCGCTC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 109, 123
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 100, 120
BstDSI CCRYGG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 66, 104
BstV1I GCAGC 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 122, 205
BtgI CCRYGG 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 100, 120
CfoI GCGC 2 cut(s) 66, 104
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 154
CviJI RGCY 4 cut(s) 14, 46, 122, 205
CviKI_1 RGCY 4 cut(s) 14, 46, 122, 205
CviQI GTAC 1 cut(s) 154
FaiI YATR 3 cut(s) 62, 132, 141
FauI CCCGC 1 cut(s) 111
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 2 cut(s) 65, 103
GluI GCNGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 122, 205
HapII CCGG 1 cut(s) 99
HhaI GCGC 2 cut(s) 66, 104
Hin6I GCGC 2 cut(s) 64, 102
HinP1I GCGC 2 cut(s) 64, 102
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 81
HspAI GCGC 2 cut(s) 64, 102
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 37, 37, 112
Lsp1109I GCAGC 1 cut(s) 23
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 68, 82
MbiI CCGCTC 1 cut(s) 118
MboII GAAGA 1 cut(s) 191
MnlI CCTC 2 cut(s) 23, 119
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MspI CCGG 1 cut(s) 99
NaeI GCCGGC 1 cut(s) 100
NgoMIV GCCGGC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 120
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 120
SetI ASST 2 cut(s) 16, 84
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 7 cut(s) 27, 36, 64, 111, 122, 131, 136
SgrAI CRCCGGYG 1 cut(s) 98
SsiI CCGC 1 cut(s) 118
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 16, 39
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.