FvH4_6g18660

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007798
Physical Location & Seq
Forward (+)
12321242 .. 12324482
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18660.t1

Sequence Viewer

Length: 222 bp
ATGGAATCAGCGACGGCTCGCAGAAGCGGTGGTGGCCTCTTCGAAGGTCTTTACAGGGTCATCATGCGCCGCAACTCCGTCTATGTCACCTTCGTCATCGCCGGCGCCTTTCTCGGCGAGCGGGCTGTGGATTATGGAGTTCATAGGCTATGGGAGTACAACAATGTTGGGAAACGGTATGAAGACATCCCAGTTTTGGGGCAAAGGCCAGTTGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

74

Amino Acids

8.31

Weight (kDa)

8.12

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 16 - 64 2.9e-21 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 121
AciI CCGC 3 cut(s) 27, 70, 121
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 196, 197
AoxI GGCC 2 cut(s) 34, 206
AspLEI GCGC 2 cut(s) 69, 107
AsuHPI GGTGA 1 cut(s) 79
AsuII TTCGAA 1 cut(s) 42
BanI GGYRCC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 189
BceAI ACGGC 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 197
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 191, 209
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 196, 197
BseNI ACTGG 2 cut(s) 191, 209
BshFI GGCC 2 cut(s) 36, 208
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 196, 197
BsnI GGCC 2 cut(s) 36, 208
Bsp119I TTCGAA 1 cut(s) 42
BspACI CCGC 3 cut(s) 27, 70, 121
BspANI GGCC 2 cut(s) 36, 208
BspLI GGNNCC 1 cut(s) 106
BspT104I TTCGAA 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 191, 209
BssAI RCCGGY 1 cut(s) 101
BssNI GRCGYC 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 19, 103, 119, 123
BstF5I GGATG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 69, 107
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 2 cut(s) 36, 208
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 4 cut(s) 19, 103, 119, 123
CfoI GCGC 2 cut(s) 69, 107
Cfr10I RCCGGY 1 cut(s) 101
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 17, 36, 125, 148, 208
CviKI_1 RGCY 5 cut(s) 17, 36, 125, 148, 208
CviQI GTAC 1 cut(s) 157
DinI GGCGCC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
FaeI CATG 1 cut(s) 67
FaiI YATR 6 cut(s) 65, 84, 135, 144, 151, 180
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 70
GlaI GCGC 2 cut(s) 68, 106
GluI GCNGC 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 2 cut(s) 36, 208
HapII CCGG 1 cut(s) 102
HhaI GCGC 2 cut(s) 69, 107
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 2 cut(s) 67, 105
HinP1I GCGC 2 cut(s) 67, 105
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 38, 100
HpyCH4III ACNGT 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 2 cut(s) 67, 105
KasI GGCGCC 1 cut(s) 104
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
LpnPI CCDG 3 cut(s) 40, 115, 204
MaeIII GTNAC 1 cut(s) 85
MbiI CCGCTC 1 cut(s) 121
MboII GAAGA 2 cut(s) 31, 194
Mly113I GGCGCC 1 cut(s) 105
MnlI CCTC 1 cut(s) 47
MreI CGCCGGCG 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 101
MspI CCGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 33
NaeI GCCGGC 1 cut(s) 103
NarI GGCGCC 1 cut(s) 105
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 106
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 85
NspV TTCGAA 1 cut(s) 42
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 71
PluTI GGCGCC 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 106
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SatI GCNGC 1 cut(s) 70
SetI ASST 2 cut(s) 49, 92
SfoI GGCGCC 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 42
SgeI CNNG 8 cut(s) 30, 67, 76, 114, 125, 130, 134, 203
SgrAI CRCCGGYG 1 cut(s) 101
SsiI CCGC 3 cut(s) 27, 70, 121
SspDI GGCGCC 1 cut(s) 104
TaaI ACNGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 42
TatI WGTACW 1 cut(s) 156
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 1 cut(s) 5
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 131, 195
TspGWI ACGGA 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.