MD14G1022700.v1.1

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0007798
Physical Location & Seq
Forward (+)
2060686 .. 2062642
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1022700.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGATTCAGCGGTTCGTAGGAGCGGCGGAGGCCTCTTCGAAGGTCTATACAGGGTCATCATGCGCCGTAACTCCGTCTACGTCACCTTCGTCATCGCTGGAGCCTTCCTCGGCGAGCGGGCTGTAGATTATGGAGTTCATAAGCTGTGGGAGTACAATAATGTTGGGAAACGATATGAAGATATTTCAGTTCTGGGGACAAGGCAATCTGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

73

Amino Acids

8.19

Weight (kDa)

8.09

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 63 1.5e-21 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 24, 118
AccI GTMKAC 1 cut(s) 78
AciI CCGC 4 cut(s) 11, 24, 27, 118
AfaI GTAC 1 cut(s) 155
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AoxI GGCC 1 cut(s) 31
AspLEI GCGC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 39
BceAI ACGGC 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpmI CTGGAG 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 109
BshFI GGCC 1 cut(s) 33
BslFI GGGAC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 39
BspACI CCGC 4 cut(s) 11, 24, 27, 118
BspANI GGCC 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 39
BsrBI CCGCTC 2 cut(s) 24, 118
BssECI CCNNGG 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 116, 120
BstHHI GCGC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 116, 120
CfoI GCGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 33, 104, 122, 145
CviKI_1 RGCY 4 cut(s) 33, 104, 122, 145
CviQI GTAC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 42
Eco147I AGGCCT 1 cut(s) 33
FaeI CATG 1 cut(s) 64
FaiI YATR 5 cut(s) 49, 62, 132, 141, 177
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 111
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 25
GlaI GCGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 33
HhaI GCGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 35, 97, 115
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 64
LmnI GCTCC 2 cut(s) 21, 101
LpnPI CCDG 3 cut(s) 37, 84, 179
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 68, 82
MbiI CCGCTC 2 cut(s) 24, 118
MboII GAAGA 2 cut(s) 28, 191
MnlI CCTC 3 cut(s) 23, 44, 119
MspA1I CMGCKG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 30
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 25
SetI ASST 4 cut(s) 46, 84, 89, 147
SfcI CTRYAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 8 cut(s) 64, 73, 111, 122, 127, 131, 206, 213
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 4 cut(s) 11, 24, 27, 118
StuI AGGCCT 1 cut(s) 33
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 39
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 1 cut(s) 5
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 128, 192
TspGWI ACGGA 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.