Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327239.1

Orthogroup ID

OG0007798

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 860

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327239.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

atggcttcaacacctcgacgaaccggtggaggcctcttcgaagggctctacagggtcatcatgcgccgcaactccgtctacgtcaccttcgtcatcgccggagctttcctcggtgaacgggctgtggattatggagttcataggctgtgggagtacaataacgttggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_UQCRX_QCR9

Protein Analysis

56

Amino Acids

6.32

Weight (kDa)

9.97

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52730
fragaria_vesca	FvH4_5g38790 FvH4_5g38790 FvH4_5g38790 FvH4_6g18660
malus_domestica	MD07G1149900.v1.1 MD12G1036000.v1.1 MD14G1022700.v1.1 MD15G1359000.v1.1 MD16G1126500.v1.1
prunus_persica	Prupe.1G506800_v2.0.a1 Prupe.7G110400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0473621 RchiOBHm_Chr7g0240771
rosa_multiflora	Rmu_co8327239.1_g000001 Rmu_sc0003069.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219630
rosa_rugosa	Rorug03G0133300 Rorug07G0338700
rosa_samantha	Rh3DG208900 Rh7CG511600 Rh7DG478300
rosa_wichuraiana	Rw3G015940 Rw7G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	1 cut(s)	67
AclI	AACGTT	1 cut(s)	162
AfaI	GTAC	1 cut(s)	155
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	9
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	76, 125
AsuII	TTCGAA	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	49
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
Bpu14I	TTCGAA	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	33
BshTI	ACCGGT	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	24, 99
BsnI	GGCC	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	48
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	33
BspT104I	TTCGAA	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	79
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	154
CspAI	ACCGGT	1 cut(s)	23
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	6 cut(s)	5, 33, 46, 104, 122, 145
CviKI_1	RGCY	6 cut(s)	5, 33, 46, 104, 122, 145
CviQI	GTAC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	62, 132, 141
FatI	CATG	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	67
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	2 cut(s)	24, 99
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HpaII	CCGG	2 cut(s)	24, 99
HphI	GGTGA	2 cut(s)	76, 125
Hpy166II	GTNNAC	2 cut(s)	79, 116
Hpy8I	GTNNAC	2 cut(s)	79, 116
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	2 cut(s)	35, 97
HpyCH4IV	ACGT	2 cut(s)	81, 162
HpySE526I	ACGT	2 cut(s)	81, 162
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	3 cut(s)	37, 37, 112
MaeII	ACGT	2 cut(s)	81, 162
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	23, 24, 44, 119
MspI	CCGG	2 cut(s)	24, 99
NlaIII	CATG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	68
Psp1406I	AACGTT	1 cut(s)	162
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SatI	GCNGC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	5 cut(s)	16, 84, 89, 106, 165
SfcI	CTRYAG	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	39
SgeI	CNNG	7 cut(s)	27, 36, 64, 73, 111, 122, 131
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	67
StuI	AGGCCT	1 cut(s)	33
TaiI	ACGT	2 cut(s)	84, 165
TaqI	TCGA	2 cut(s)	16, 39
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.