Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007798

Physical Location & Seq

Genomic Coordinates Reverse (-)

13796726 .. 13798702

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G110400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAATTCAGCAGCTCGAAGAAGCGGTGGAGGCCTCTTCGAAGGCATTTACAGGGTCATCATGCGCCGCAACTCCGTCTACGTCACCTTTGTCATCGCCGGCGCTTTCCTCGGCGAGCGGGCTGTAGATTATGGAGTTCATAAGCTGTGGGAGTACAACAATGTTGGGAAACGATATGAAGACATTTCAGTTTTGGGGCAAAGGCCGTCGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_UQCRX_QCR9

Protein Analysis

73

Amino Acids

8.16

Weight (kDa)

9.22

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52730
fragaria_vesca	FvH4_5g38790 FvH4_5g38790 FvH4_5g38790 FvH4_6g18660
malus_domestica	MD07G1149900.v1.1 MD12G1036000.v1.1 MD14G1022700.v1.1 MD15G1359000.v1.1 MD16G1126500.v1.1
prunus_persica	Prupe.1G506800_v2.0.a1 Prupe.7G110400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0473621 RchiOBHm_Chr7g0240771
rosa_multiflora	Rmu_co8327239.1_g000001 Rmu_sc0003069.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219630
rosa_rugosa	Rorug03G0133300 Rorug07G0338700
rosa_samantha	Rh3DG208900 Rh7CG511600 Rh7DG478300
rosa_wichuraiana	Rw3G015940 Rw7G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	3 cut(s)	24, 67, 118
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	155
AluBI	AGCT	2 cut(s)	14, 145
AluI	AGCT	2 cut(s)	14, 145
AoxI	GGCC	2 cut(s)	31, 203
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	66, 104
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	190
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	2 cut(s)	12, 67
BlsI	GCNGC	2 cut(s)	13, 68
BpiI	GAAGAC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	2 cut(s)	33, 205
BsiSI	CCGG	1 cut(s)	99
BsnI	GGCC	2 cut(s)	33, 205
Bsp119I	TTCGAA	1 cut(s)	39
BspACI	CCGC	3 cut(s)	24, 67, 118
BspANI	GGCC	2 cut(s)	33, 205
BspT104I	TTCGAA	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	100, 116, 120
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	66, 104
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	33, 205
BtgZI	GCGATG	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	100, 116, 120
CfoI	GCGC	2 cut(s)	66, 104
Cfr10I	RCCGGY	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	5 cut(s)	14, 33, 122, 145, 205
CviKI_1	RGCY	5 cut(s)	14, 33, 122, 145, 205
CviQI	GTAC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	4
FaeI	CATG	1 cut(s)	64
FaiI	YATR	4 cut(s)	62, 132, 141, 177
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	12, 67
Fsp4HI	GCNGC	2 cut(s)	12, 67
GlaI	GCGC	2 cut(s)	65, 103
GluI	GCNGC	2 cut(s)	12, 67
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	33, 205
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	2 cut(s)	66, 104
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	2 cut(s)	64, 102
HinP1I	GCGC	2 cut(s)	64, 102
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	2 cut(s)	64, 102
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
LpnPI	CCDG	2 cut(s)	37, 112
Lsp1109I	GCAGC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	82
MbiI	CCGCTC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	28, 30, 191
MluCI	AATT	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	3 cut(s)	23, 44, 119
MreI	CGCCGGCG	1 cut(s)	98
MroNI	GCCGGC	1 cut(s)	98
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	30
NaeI	GCCGGC	1 cut(s)	100
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	33
PdiI	GCCGGC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	13, 68
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SatI	GCNGC	2 cut(s)	12, 67
SetI	ASST	4 cut(s)	16, 84, 89, 147
SfcI	CTRYAG	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	39
SgeI	CNNG	7 cut(s)	27, 64, 73, 111, 122, 127, 131
SgrAI	CRCCGGYG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	4
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	3 cut(s)	24, 67, 118
StuI	AGGCCT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	16, 39
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	17, 128, 192
TspGWI	ACGGA	1 cut(s)	64
XapI	RAATTY	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.