RchiOBHm_Chr7g0240771

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007798
Physical Location & Seq
Reverse (-)
66766480 .. 66770682
4203 bp
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UTR
Exon/CDS
Intron
PRQ21578

Sequence Viewer

Length: 219 bp
ATGGCTTCAACACCTCGAAGAACCAGTGGAGGCCTCTTCGAAGGGCTCTACAGAGTCATCATGCGCTGCAACTCTGTCTACGTCACCTTCATCATCCCCGGTGCTTTCCTCGGTGAATGGGCTGTGGATTATGGAGTTCATAGGCTGTGGGAGTACAGTAACATTGGGAAACGATATGAAGACATTCCAGTTTTGGGGCAAAGGCCAACAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

72

Amino Acids

8.26

Weight (kDa)

6.56

Isoelectric Point (pI)

24.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 63 4.8e-17 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 9
AoxI GGCC 2 cut(s) 31, 203
ApeKI GCWGC 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 76, 125
AsuII TTCGAA 1 cut(s) 39
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 97, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 24, 188
BseDI CCNNGG 2 cut(s) 97, 109
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 194
BseNI ACTGG 2 cut(s) 24, 188
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 2 cut(s) 33, 205
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 194
BsnI GGCC 2 cut(s) 33, 205
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 48
BspANI GGCC 2 cut(s) 33, 205
BspT104I TTCGAA 1 cut(s) 39
BsrI ACTGG 2 cut(s) 24, 188
BssECI CCNNGG 2 cut(s) 97, 109
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 39
BstF5I GGATG 1 cut(s) 93
BstHHI GCGC 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 33, 205
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 31
CfoI GCGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 61
CviJI RGCY 6 cut(s) 5, 33, 46, 122, 145, 205
CviKI_1 RGCY 6 cut(s) 5, 33, 46, 122, 145, 205
CviQI GTAC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 62, 132, 141, 177
FatI CATG 1 cut(s) 60
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 67
GlaI GCGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 67
HaeIII GGCC 2 cut(s) 33, 205
HapII CCGG 1 cut(s) 99
HhaI GCGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 1 cut(s) 54
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 76, 125
Hpy166II GTNNAC 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 35, 97
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 64
LpnPI CCDG 3 cut(s) 37, 112, 201
Lsp1109I GCAGC 1 cut(s) 53
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 82, 158
MboII GAAGA 3 cut(s) 28, 30, 191
MhlI GDGCHC 1 cut(s) 48
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 4 cut(s) 23, 24, 44, 119
MroXI GAANNNNTTC 1 cut(s) 183
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 99
NciI CCSGG 1 cut(s) 99
NlaIII CATG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 67
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 48
SetI ASST 3 cut(s) 16, 84, 89
SfcI CTRYAG 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 7 cut(s) 27, 36, 73, 110, 111, 122, 200
SseBI AGGCCT 1 cut(s) 33
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 16, 39
TatI WGTACW 1 cut(s) 153
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 79, 128, 192
TspRI CASTG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.