Rroxscaffold_3G00219630

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007798
Physical Location & Seq
Forward (+)
1717271 .. 1719067
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219630.1

Sequence Viewer

Length: 219 bp
ATGGCTTCAACACCTCGAAGAACCGGTGGAGGCCTCTTCGAAGGGCTCTACAGGGTCGTCATGCGCCGCAACTCCGTCTACGTCACCTTCGTCATCGCCGGCGCTTTCCTCGGTGAACGGGCTGTGGATTATGGAGTTCATCGTCTGTGGGAGTACAATAACGTTGGGAAACGATATGAAGACATTCCAGTTTTGGGGCAAAGGCCAACAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

72

Amino Acids

8.21

Weight (kDa)

9.29

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 63 3.1e-21 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AciI CCGC 1 cut(s) 67
AclI AACGTT 1 cut(s) 162
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 194
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 1 cut(s) 9
AoxI GGCC 2 cut(s) 31, 203
AsiGI ACCGGT 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 2 cut(s) 66, 104
AsuHPI GGTGA 2 cut(s) 76, 125
AsuII TTCGAA 1 cut(s) 39
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 2 cut(s) 23, 98
Bse1I ACTGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 188
BshFI GGCC 2 cut(s) 33, 205
BshTI ACCGGT 1 cut(s) 23
BsiSI CCGG 2 cut(s) 24, 99
BslI CCNNNNNNNGG 1 cut(s) 194
BsnI GGCC 2 cut(s) 33, 205
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 48
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 33, 205
BspT104I TTCGAA 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 23, 98
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 2 cut(s) 23, 98
BssECI CCNNGG 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 66, 104
BstSFI CTRYAG 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 33, 205
BtgZI GCGATG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 2 cut(s) 66, 104
Cfr10I RCCGGY 2 cut(s) 23, 98
Csp6I GTAC 1 cut(s) 154
CspAI ACCGGT 1 cut(s) 23
CviAII CATG 1 cut(s) 61
CviJI RGCY 5 cut(s) 5, 33, 46, 122, 205
CviKI_1 RGCY 5 cut(s) 5, 33, 46, 122, 205
CviQI GTAC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 132, 177
FatI CATG 1 cut(s) 60
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 67
GlaI GCGC 2 cut(s) 65, 103
GluI GCNGC 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 33, 205
HapII CCGG 2 cut(s) 24, 99
HhaI GCGC 2 cut(s) 66, 104
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 2 cut(s) 64, 102
HinP1I GCGC 2 cut(s) 64, 102
HpaII CCGG 2 cut(s) 24, 99
HphI GGTGA 2 cut(s) 76, 125
Hpy166II GTNNAC 2 cut(s) 79, 116
Hpy8I GTNNAC 2 cut(s) 79, 116
HpyAV CCTTC 2 cut(s) 35, 97
HpyCH4IV ACGT 2 cut(s) 81, 162
HpySE526I ACGT 2 cut(s) 81, 162
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 2 cut(s) 64, 102
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 37, 37, 112, 201
MaeII ACGT 2 cut(s) 81, 162
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 3 cut(s) 28, 30, 191
MhlI GDGCHC 1 cut(s) 48
MnlI CCTC 4 cut(s) 23, 24, 44, 119
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 183
MspI CCGG 2 cut(s) 24, 99
NaeI GCCGGC 1 cut(s) 100
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 23
PkrI GCNGC 1 cut(s) 68
Psp1406I AACGTT 1 cut(s) 162
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 67
SduI GDGCHC 1 cut(s) 48
SetI ASST 4 cut(s) 16, 84, 89, 165
SfcI CTRYAG 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 8 cut(s) 27, 36, 64, 73, 111, 122, 131, 200
SgrAI CRCCGGYG 1 cut(s) 98
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 1 cut(s) 67
StuI AGGCCT 1 cut(s) 33
TaiI ACGT 2 cut(s) 84, 165
TaqI TCGA 2 cut(s) 16, 39
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 69
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 128, 192
TspGWI ACGGA 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.