FvH4_5g38790

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007798
Physical Location & Seq
Reverse (-)
28683186 .. 28685076
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38790.t2

Sequence Viewer

Length: 219 bp
ATGGCTTCAGCGCCTCGAAGAAGCGGTGGAGGCCTCTTCGAAGGACTCTACAGGGTCATCATGCGCCGCAACTCCGTCTACGTCACCTTCGTCATTGCCGGCGCCTTCCTCGGTGAACGGGCTGTGGATTACGGGGTTCATCGGCTGTGGGAGTACAATAATGTTGGGAAACGATACGAGGACATTCCAGTCTTGGGGCAGAGACCATCGGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

73

Amino Acids

8.16

Weight (kDa)

9.29

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 63 2.7e-21 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 78
AciI CCGC 2 cut(s) 24, 67
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 196
AoxI GGCC 1 cut(s) 31
AspLEI GCGC 3 cut(s) 13, 66, 104
AsuHPI GGTGA 2 cut(s) 76, 125
AsuII TTCGAA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 101
BccI CCATC 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 196
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 2 cut(s) 14, 105
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 103
Bpu14I TTCGAA 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 188
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 196
BsnI GGCC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 39
BspACI CCGC 2 cut(s) 24, 67
BspANI GGCC 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 100
BstF5I GGATG 1 cut(s) 217
BstH2I RGCGCY 2 cut(s) 14, 105
BstHHI GCGC 3 cut(s) 13, 66, 104
BstMAI GTCTC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 49
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 3 cut(s) 13, 66, 104
Cfr10I RCCGGY 1 cut(s) 98
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 5, 33, 122, 145
CviKI_1 RGCY 4 cut(s) 5, 33, 122, 145
CviQI GTAC 1 cut(s) 154
DinI GGCGCC 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 196
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FaeI CATG 1 cut(s) 64
FaiI YATR 1 cut(s) 62
FatI CATG 1 cut(s) 60
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 67
GlaI GCGC 3 cut(s) 12, 65, 103
GluI GCNGC 1 cut(s) 67
HaeII RGCGCY 2 cut(s) 14, 105
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 99
HhaI GCGC 3 cut(s) 13, 66, 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 3 cut(s) 11, 64, 102
HinP1I GCGC 3 cut(s) 11, 64, 102
HinfI GANTC 1 cut(s) 45
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 76, 125
Hpy166II GTNNAC 2 cut(s) 79, 116
Hpy188I TCNGA 1 cut(s) 211
Hpy8I GTNNAC 2 cut(s) 79, 116
HpyAV CCTTC 3 cut(s) 35, 97, 115
HpyCH4IV ACGT 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 3 cut(s) 11, 64, 102
KasI GGCGCC 1 cut(s) 101
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 37, 112, 201
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 2 cut(s) 28, 30
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 39
MnlI CCTC 5 cut(s) 23, 24, 44, 119, 172
MroNI GCCGGC 1 cut(s) 98
MspI CCGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 30
NaeI GCCGGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 102
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 39
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 67
SchI GAGTC 1 cut(s) 39
SetI ASST 2 cut(s) 84, 89
SfcI CTRYAG 1 cut(s) 49
SfoI GGCGCC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 39
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 2 cut(s) 24, 67
SspDI GGCGCC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 33
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 16, 39
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 69
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.