MD07G1149900.v1.1

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0007798
Physical Location & Seq
Reverse (-)
21834144 .. 21834362
219 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1149900.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGATTCAGCTGCTCGAAGGAGTGGCGGAGACCTCTTCGAAAGTCTATACAGGGTCATCATGCGCCGTAACTCCATCTACGTCACCTTCGTCATCGCTGGAGCCTTCCTTGGCGAGCGGGCTGTAGATTATGGAGTTCATAAGCTGTGGGAGTACAATAATGTTAGGAAACGATATGAAGATATTTCAGTTCTGGGGACAAAGCAATCGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

73

Amino Acids

8.34

Weight (kDa)

8.06

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 63 2.8e-19 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 2 cut(s) 27, 118
AfaI GTAC 1 cut(s) 155
AluBI AGCT 2 cut(s) 11, 145
AluI AGCT 2 cut(s) 11, 145
Alw26I GTCTC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 39
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 211
Bso31I GGTCTC 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 39
BspACI CCGC 2 cut(s) 27, 118
BspLI GGNNCC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 24
BsrBI CCGCTC 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 116, 120
BstHHI GCGC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 116, 120
CfoI GCGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 11, 104, 122, 145
CviKI_1 RGCY 4 cut(s) 11, 104, 122, 145
CviQI GTAC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 64
FaiI YATR 5 cut(s) 49, 62, 132, 141, 177
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 120
HhaI GCGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 211
HpyAV CCTTC 3 cut(s) 12, 97, 115
HpyCH4IV ACGT 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 3 cut(s) 37, 84, 179
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 68, 82
MbiI CCGCTC 1 cut(s) 118
MboII GAAGA 2 cut(s) 28, 191
MnlI CCTC 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 11
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 12
SetI ASST 5 cut(s) 13, 36, 84, 89, 147
SfcI CTRYAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 8 cut(s) 27, 64, 73, 111, 122, 127, 131, 206
SsiI CCGC 2 cut(s) 27, 118
StyI CCWWGG 1 cut(s) 109
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 16, 39
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 5
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 128, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.