MD15G1359000.v1.1

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0007798
Physical Location & Seq
Forward (+)
43315341 .. 43317609
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1359000.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGCTTCAGCAGCCGGAAAAACCAGCGGAGGCCTTTTCGAAGGGCTCTACAGGGTCATCATGCGCCGGAACTCAGTCTACGTCACCTTCGTCATCGCCGGCGCCTTCCTCGGTGAGCGGGCCGTGGATTATGGAGTTCACAAATTGTGGGAGTACAACAACGTTGGGAAACGGTATGAAGACATTCCAGTTTTGGGGCAAAGGCCATCGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

73

Amino Acids

8.04

Weight (kDa)

8.06

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 63 1.3e-21 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 78
AciI CCGC 2 cut(s) 27, 118
AclI AACGTT 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 194
AoxI GGCC 3 cut(s) 31, 120, 203
ApeKI GCWGC 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 2 cut(s) 66, 104
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 76, 125
AsuII TTCGAA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 214
BceAI ACGGC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 109, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 109, 123
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 3 cut(s) 33, 122, 205
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 3 cut(s) 15, 67, 99
BslI CCNNNNNNNGG 1 cut(s) 194
BsnI GGCC 3 cut(s) 33, 122, 205
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 48
BspACI CCGC 2 cut(s) 27, 118
BspANI GGCC 3 cut(s) 33, 122, 205
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 109, 123
BssNI GRCGYC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 100, 120
BstDEI CTNAG 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 66, 104
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 3 cut(s) 33, 122, 205
BtgI CCRYGG 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 100, 120
CfoI GCGC 2 cut(s) 66, 104
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 61
CviJI RGCY 6 cut(s) 5, 14, 33, 46, 122, 205
CviKI_1 RGCY 6 cut(s) 5, 14, 33, 46, 122, 205
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 73
DinI GGCGCC 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 48
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 132, 177
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 111
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 12
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 2 cut(s) 65, 103
GluI GCNGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 3 cut(s) 33, 122, 205
HapII CCGG 3 cut(s) 15, 67, 99
HhaI GCGC 2 cut(s) 66, 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 2 cut(s) 64, 102
HinP1I GCGC 2 cut(s) 64, 102
HpaII CCGG 3 cut(s) 15, 67, 99
HphI GGTGA 2 cut(s) 76, 125
Hpy166II GTNNAC 2 cut(s) 79, 139
Hpy188I TCNGA 1 cut(s) 211
Hpy8I GTNNAC 2 cut(s) 79, 139
HpyAV CCTTC 3 cut(s) 35, 97, 115
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4IV ACGT 2 cut(s) 81, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 2 cut(s) 81, 162
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 2 cut(s) 64, 102
KasI GGCGCC 1 cut(s) 101
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 28, 37, 37, 80, 112, 201
Lsp1109I GCAGC 1 cut(s) 23
MaeII ACGT 2 cut(s) 81, 162
MaeIII GTNAC 1 cut(s) 82
MbiI CCGCTC 1 cut(s) 118
MboII GAAGA 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 143
Mly113I GGCGCC 1 cut(s) 102
MnlI CCTC 2 cut(s) 23, 119
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 3 cut(s) 15, 67, 99
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 102
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 120
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 48
SetI ASST 3 cut(s) 84, 89, 165
SfcI CTRYAG 1 cut(s) 49
SfoI GGCGCC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 39
SgrAI CRCCGGYG 1 cut(s) 98
Sse9I AATT 1 cut(s) 143
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 2 cut(s) 27, 118
SspDI GGCGCC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 33
TaaI ACNGT 1 cut(s) 174
TaiI ACGT 2 cut(s) 84, 165
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 143
TatI WGTACW 1 cut(s) 153
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.