Rorug07G0338700

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007798
Physical Location & Seq
Reverse (-)
37291391 .. 37293367
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0338700.1

Sequence Viewer

Length: 1503 bp
ATGGATTTCTTGTCTAGTATAGTACTGTTGTGTCTCTGCTTTATCTCCTGCTTCTTAATCCAAGCCCTCCATAGAAGAACCAGAGTTAGGCTTCCACCAGGACCAAAGCCATTTCCATTGATTGGAAATCTGTTTGAGCTTGGAGACAAACCTCATCTCTCTTTGACCAAGCTTTCACAAAACTATGGCCCCATAATGTCTTTGAAACTAGGCCGGATAACCACTATTGTAGTTTCTTCATCAACCATGGCCAAAGAAATCCTCCGAACCAATGACCAACTTTTTTGCAACCGAACAATCCCAGATGCGTTGCGAGACATAGGAGACTACAGTTTGCCTTGGATACCAGTATCAACAAGGTGGAGAAATCTTCGAAAAATATGCAGCTCCCACCTCTTCCACACCAAAGTACTTGATGCCAACCAAGAAAACCGGCGAGTGAAAGTGCAAGAGCTCATAGCTAGTGTCAATGACTGCATGGTAAAGGGTTTGGCAATAGATATTGGAAAGGCTGCTTTCAAAACTACACTCAATTTGCTGTCGAGAACTATTTTCTCGGTGGATTTGGCTGATGACTCGAGTAGTAGTAGTGAGATGACTAGAGAGTTCAAGAAGATTGTTAATGGTATCGTGGAAGAGGCTGGGAAGCCGAATTTGGGGGACTATTTTCCTGTGATTAGGAAGATTGATCCCCAAGGCATAAGGCGGCGCTTTACAAATTATTACAACAAGATGTTAGGCTTGATTGAATCAGTGATCAGTCAAAGGTTGGAATGTAGAAAAGGGGGTGATTATGTAACAAGTAATGATATGTTGGATGCTCTTATAAACCTCAGTGAAGAGAAAAATGAAGAGGATTTGAAGAACTCCGAAGTTGTTGAACATTTGTTTGTGGCTCTATTTGCTGCGGGAACAGATACCACTTCAGCCACATTGGAATGGGCAATGGCGGAGCTACTACACAACCCAAAGAGCCTTTCTAAAGCTCAAGAAGAGCTGGATCAAATGATTGGAAAAGGAAAACCAATCGAGGAAACCGACATTGCTAGACTCCCTTACTTACAAGCAATAATCAAGGAAACCTTCCGGTTGCACCCAACGGTTCCGTTGCTACTGCCACGAAAAGCTGAAACAGATGTAGAAATTGGGGGCTATATTGTCCCAAAGGGTGCACAAGTTCTAGTTAATGTTTGGGCCATAGGCCGAGACCCCGGCCTTTGGGACAACCCAAACTCTTTTATGCCGGATAGGTTCTTAGGATTGGACAACCAATTTGATGTTATGGGAAAAAACTTTGAGCTTATTCCATTTGGCGGTGGGAGGAGAATCTGTCCAGGTTTGCCATTGGCAATGAGAATGTTGCACTTGATGTTGGGTTCACTCATTAACTGCTTTGATTGGAAGCTTGAAAATGGAGTTGTACCTGAGACTATGAACATGGAAGACAAGTTTGGCCTCTCTTTACATATGGCTCAGCCTCTCAAAGCTGTTCCCCAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

500

Amino Acids

56.16

Weight (kDa)

7.57

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 484 8.9e-102 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 827
AccB7I CCANNNNNTGG 1 cut(s) 122
AciI CCGC 4 cut(s) 706, 908, 950, 1314
AclWI GGATC 2 cut(s) 683, 1008
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 652
AcuI CTGAAG 1 cut(s) 909
AfaI GTAC 3 cut(s) 24, 411, 1422
AfiI CCNNNNNNNGG 5 cut(s) 87, 122, 656, 1218, 1313
AgsI TTSAA 7 cut(s) 205, 520, 610, 749, 862, 881, 1409
AjnI CCWGG 2 cut(s) 97, 1333
AjuI GAANNNNNNNTTGG 6 cut(s) 638, 670, 961, 993, 1434, 1466
Alw21I GWGCWC 2 cut(s) 456, 1174
Alw26I GTCTC 6 cut(s) 38, 138, 309, 318, 1200, 1421
Alw44I GTGCAC 1 cut(s) 1170
AlwI GGATC 2 cut(s) 683, 1008
Ama87I CYCGRG 1 cut(s) 577
AoxI GGCC 7 cut(s) 187, 211, 249, 1194, 1201, 1213, 1453
ApaLI GTGCAC 1 cut(s) 1170
ApeKI GCWGC 3 cut(s) 384, 512, 905
ApoI RAATTY 1 cut(s) 652
ArsI GACNNNNNNTTYG 2 cut(s) 1256, 1288
AspLEI GCGC 1 cut(s) 711
AspS9I GGNCC 3 cut(s) 101, 188, 1194
AsuC2I CCSGG 1 cut(s) 1212
AsuHPI GGTGA 1 cut(s) 800
AsuII TTCGAA 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 577
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 1174
BalI TGGCCA 1 cut(s) 251
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 1449
Bbv12I GWGCWC 2 cut(s) 456, 1174
BbvI GCAGC 3 cut(s) 396, 499, 892
BcgI CGANNNNNNTGC 2 cut(s) 363, 397
BciT130I CCWGG 2 cut(s) 99, 1335
BciVI GTATCC 1 cut(s) 336
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 1 cut(s) 1212
BcoDI GTCTC 6 cut(s) 38, 138, 309, 318, 1200, 1421
BfaI CTAG 6 cut(s) 15, 209, 462, 600, 1047, 1181
BfmI CTRYAG 1 cut(s) 328
BfoI RGCGCY 1 cut(s) 712
BfuI GTATCC 1 cut(s) 336
BisI GCNGC 4 cut(s) 385, 513, 707, 906
BlpI GCTNAGC 1 cut(s) 1473
BlsI GCNGC 4 cut(s) 386, 514, 708, 907
BmcAI AGTACT 2 cut(s) 24, 411
Bme1390I CCNGG 3 cut(s) 99, 1212, 1335
Bme18I GGWCC 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 577
BmgT120I GGNCC 3 cut(s) 101, 188, 1194
BmiI GGNNCC 2 cut(s) 190, 1104
BmrFI CCNGG 3 cut(s) 99, 1212, 1335
BmrI ACTGGG 1 cut(s) 1489
BmsI GCATC 3 cut(s) 295, 406, 808
BmuI ACTGGG 1 cut(s) 1489
BpiI GAAGAC 1 cut(s) 1449
Bpu1102I GCTNAGC 1 cut(s) 1473
Bpu14I TTCGAA 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 972
BpuMI CCSGG 1 cut(s) 1212
BsaI GGTCTC 1 cut(s) 1200
BsaJI CCNNGG 4 cut(s) 246, 338, 694, 1210
BsaWI WCCGGW 1 cut(s) 1086
BsaXI ACNNNNNCTCC 2 cut(s) 1315, 1345
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 122, 656, 1218, 1313
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 347, 1495
Bse3DI GCAATG 3 cut(s) 951, 1041, 1356
BseBI CCWGG 2 cut(s) 99, 1335
BseDI CCNNGG 4 cut(s) 246, 338, 694, 1210
BseGI GGATG 1 cut(s) 823
BseLI CCNNNNNNNGG 5 cut(s) 87, 122, 656, 1218, 1313
BseMI GCAATG 3 cut(s) 951, 1041, 1356
BseMII CTCAG 3 cut(s) 847, 1416, 1487
BseNI ACTGG 2 cut(s) 347, 1495
BseRI GAGGAG 1 cut(s) 1336
BseSI GKGCMC 1 cut(s) 1174
BseXI GCAGC 3 cut(s) 396, 499, 892
BseYI CCCAGC 1 cut(s) 641
BshFI GGCC 7 cut(s) 189, 213, 251, 1196, 1203, 1215, 1455
BsiHKAI GWGCWC 2 cut(s) 456, 1174
BsiHKCI CYCGRG 1 cut(s) 577
BsiSI CCGG 5 cut(s) 214, 433, 1087, 1212, 1244
BslFI GGGAC 3 cut(s) 674, 1145, 1235
BslI CCNNNNNNNGG 5 cut(s) 87, 122, 656, 1218, 1313
BsmAI GTCTC 6 cut(s) 38, 138, 309, 318, 1200, 1421
BsmFI GGGAC 3 cut(s) 674, 1145, 1235
BsnI GGCC 7 cut(s) 189, 213, 251, 1196, 1203, 1215, 1455
Bso31I GGTCTC 1 cut(s) 1200
BsoBI CYCGRG 1 cut(s) 577
Bsp119I TTCGAA 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 456, 1174
Bsp143I GATC 3 cut(s) 688, 756, 1000
Bsp1720I GCTNAGC 1 cut(s) 1473
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 4 cut(s) 706, 908, 950, 1314
BspANI GGCC 7 cut(s) 189, 213, 251, 1196, 1203, 1215, 1455
BspCNI CTCAG 3 cut(s) 846, 1417, 1486
BspLI GGNNCC 2 cut(s) 190, 1104
BspPI GGATC 2 cut(s) 683, 1008
BspQI GCTCTTC 1 cut(s) 987
BspT104I TTCGAA 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 1200
BsrDI GCAATG 3 cut(s) 951, 1041, 1356
BsrFI RCCGGY 1 cut(s) 432
BsrI ACTGG 2 cut(s) 347, 1495
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 4 cut(s) 246, 338, 694, 1210
BssMI GATC 3 cut(s) 688, 756, 1000
BssT1I CCWWGG 3 cut(s) 246, 338, 694
Bst2UI CCWGG 2 cut(s) 99, 1335
Bst4CI ACNGT 3 cut(s) 27, 332, 1102
Bst6I CTCTTC 5 cut(s) 401, 630, 834, 846, 987
BstBI TTCGAA 1 cut(s) 373
BstDEI CTNAG 4 cut(s) 833, 1255, 1425, 1473
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 823
BstH2I RGCGCY 1 cut(s) 712
BstHHI GCGC 1 cut(s) 711
BstKTI GATC 3 cut(s) 691, 759, 1003
BstMAI GTCTC 6 cut(s) 38, 138, 309, 318, 1200, 1421
BstMBI GATC 3 cut(s) 688, 756, 1000
BstMWI GCNNNNNNNGC 1 cut(s) 902
BstNI CCWGG 2 cut(s) 99, 1335
BstSCI CCNGG 3 cut(s) 97, 1210, 1333
BstSFI CTRYAG 1 cut(s) 328
BstSLI GKGCMC 1 cut(s) 1174
BstV1I GCAGC 3 cut(s) 396, 499, 892
BstV2I GAAGAC 1 cut(s) 1449
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 7 cut(s) 189, 213, 251, 1196, 1203, 1215, 1455
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 823
BtsIMutI CAGTG 2 cut(s) 759, 841
CfoI GCGC 1 cut(s) 711
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 101, 188, 1194
Csp6I GTAC 3 cut(s) 23, 410, 1421
CviAII CATG 3 cut(s) 247, 478, 1438
CviQI GTAC 3 cut(s) 23, 410, 1421
DdeI CTNAG 4 cut(s) 833, 1255, 1425, 1473
DpnI GATC 3 cut(s) 690, 758, 1002
DpnII GATC 3 cut(s) 688, 756, 1000
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 5 cut(s) 401, 630, 834, 846, 987
EarI CTCTTC 5 cut(s) 401, 630, 834, 846, 987
EciI GGCGGA 1 cut(s) 965
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 3 cut(s) 246, 338, 694
Eco24I GRGCYC 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 1200
Eco47I GGWCC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 577
EcoICRI GAGCTC 1 cut(s) 454
EcoRII CCWGG 2 cut(s) 97, 1333
EcoT14I CCWWGG 3 cut(s) 246, 338, 694
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 3 cut(s) 246, 338, 694
FaeI CATG 3 cut(s) 250, 481, 1441
FalI AAGNNNNNCTT 2 cut(s) 1067, 1099
FaqI GGGAC 3 cut(s) 674, 1145, 1235
FatI CATG 3 cut(s) 246, 477, 1437
FauI CCCGC 1 cut(s) 901
FauNDI CATATG 1 cut(s) 1467
FbaI TGATCA 1 cut(s) 756
Fnu4HI GCNGC 4 cut(s) 385, 513, 707, 906
FokI GGATG 1 cut(s) 830
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 4 cut(s) 385, 513, 707, 906
FspBI CTAG 6 cut(s) 15, 209, 462, 600, 1047, 1181
GlaI GCGC 1 cut(s) 710
GluI GCNGC 4 cut(s) 385, 513, 707, 906
GsaI CCCAGC 1 cut(s) 645
HaeII RGCGCY 1 cut(s) 712
HaeIII GGCC 7 cut(s) 189, 213, 251, 1196, 1203, 1215, 1455
HapII CCGG 5 cut(s) 214, 433, 1087, 1212, 1244
HhaI GCGC 1 cut(s) 711
Hin1II CATG 3 cut(s) 250, 481, 1441
Hin6I GCGC 1 cut(s) 709
HinP1I GCGC 1 cut(s) 709
HindIII AAGCTT 2 cut(s) 170, 1403
HinfI GANTC 4 cut(s) 575, 749, 1050, 1326
HpaII CCGG 5 cut(s) 214, 433, 1087, 1212, 1244
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 2 cut(s) 1172, 1379
Hpy188I TCNGA 2 cut(s) 266, 871
Hpy188III TCNNGA 3 cut(s) 543, 610, 989
Hpy8I GTNNAC 2 cut(s) 1172, 1379
HpyAV CCTTC 1 cut(s) 1093
HpyCH4III ACNGT 3 cut(s) 27, 332, 1102
HpyCH4V TGCA 7 cut(s) 288, 384, 448, 477, 1093, 1172, 1363
HpyF10VI GCNNNNNNNGC 1 cut(s) 902
HpyF3I CTNAG 4 cut(s) 833, 1255, 1425, 1473
Hsp92II CATG 3 cut(s) 250, 481, 1441
HspAI GCGC 1 cut(s) 709
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 3 cut(s) 688, 756, 1000
LguI GCTCTTC 1 cut(s) 987
LmnI GCTCC 2 cut(s) 392, 952
Lsp1109I GCAGC 3 cut(s) 396, 499, 892
LweI GCATC 3 cut(s) 295, 406, 808
MaeI CTAG 6 cut(s) 15, 209, 462, 600, 1047, 1181
MaeIII GTNAC 1 cut(s) 796
MalI GATC 3 cut(s) 690, 758, 1002
MboI GATC 3 cut(s) 688, 756, 1000
MhlI GDGCHC 2 cut(s) 456, 1174
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 5 cut(s) 532, 652, 718, 1143, 1271
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 2 cut(s) 569, 1044
MmeI TCCRAC 2 cut(s) 750, 795
Mox20I TGGCCA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 251
MseI TTAA 4 cut(s) 56, 621, 1185, 1386
MslI CAYNNNNRTG 1 cut(s) 937
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 5 cut(s) 214, 433, 1087, 1212, 1244
MspR9I CCNGG 3 cut(s) 99, 1212, 1335
MvaI CCWGG 2 cut(s) 99, 1335
MwoI GCNNNNNNNGC 1 cut(s) 902
NciI CCSGG 1 cut(s) 1212
NcoI CCATGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 1467
NdeII GATC 3 cut(s) 688, 756, 1000
NlaIII CATG 3 cut(s) 250, 481, 1441
NlaIV GGNNCC 2 cut(s) 190, 1104
NmeAIII GCCGAG 1 cut(s) 1229
NspV TTCGAA 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 577
PciSI GCTCTTC 1 cut(s) 987
PcsI WCGNNNNNNNCGW 1 cut(s) 1035
PfeI GAWTC 2 cut(s) 749, 1326
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 4 cut(s) 386, 514, 708, 907
PleI GAGTC 2 cut(s) 569, 1044
PpsI GAGTC 2 cut(s) 569, 1044
PsiI TTATAA 1 cut(s) 827
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 2 cut(s) 97, 1333
PspFI CCCAGC 1 cut(s) 641
PspGI CCWGG 2 cut(s) 97, 1333
PspN4I GGNNCC 2 cut(s) 190, 1104
PspPI GGNCC 3 cut(s) 101, 188, 1194
PspXI VCTCGAGB 1 cut(s) 577
RsaI GTAC 3 cut(s) 24, 411, 1422
RsaNI GTAC 3 cut(s) 23, 410, 1421
RseI CAYNNNNRTG 1 cut(s) 937
SacI GAGCTC 1 cut(s) 456
SapI GCTCTTC 1 cut(s) 987
SaqAI TTAA 4 cut(s) 56, 621, 1185, 1386
SatI GCNGC 4 cut(s) 385, 513, 707, 906
Sau3AI GATC 3 cut(s) 688, 756, 1000
Sau96I GGNCC 3 cut(s) 101, 188, 1194
ScaI AGTACT 2 cut(s) 24, 411
SchI GAGTC 2 cut(s) 569, 1044
ScrFI CCNGG 3 cut(s) 99, 1212, 1335
SduI GDGCHC 2 cut(s) 456, 1174
SfaNI GCATC 3 cut(s) 295, 406, 808
SfcI CTRYAG 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 577
SfuI TTCGAA 1 cut(s) 373
SinI GGWCC 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 937
SmlI CTYRAG 2 cut(s) 577, 987
SmoI CTYRAG 2 cut(s) 577, 987
Sse9I AATT 5 cut(s) 532, 652, 718, 1143, 1271
SsiI CCGC 4 cut(s) 706, 908, 950, 1314
SspMI CTAG 6 cut(s) 15, 209, 462, 600, 1047, 1181
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 3 cut(s) 97, 1210, 1333
StyI CCWWGG 3 cut(s) 246, 338, 694
TaaI ACNGT 3 cut(s) 27, 332, 1102
TaqI TCGA 4 cut(s) 373, 542, 578, 1029
TasI AATT 5 cut(s) 532, 652, 718, 1143, 1271
TatI WGTACW 2 cut(s) 22, 409
TauI GCSGC 1 cut(s) 709
TfiI GAWTC 2 cut(s) 749, 1326
Tru1I TTAA 4 cut(s) 56, 621, 1185, 1386
Tru9I TTAA 4 cut(s) 56, 621, 1185, 1386
TscAI CASTG 2 cut(s) 759, 841
TseI GCWGC 3 cut(s) 384, 512, 905
TspDTI ATGAA 3 cut(s) 228, 864, 1448
TspGWI ACGGA 1 cut(s) 1095
TspRI CASTG 2 cut(s) 759, 841
Van91I CCANNNNNTGG 1 cut(s) 122
VneI GTGCAC 1 cut(s) 1170
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 652
XhoI CTCGAG 1 cut(s) 577
XspI CTAG 6 cut(s) 15, 209, 462, 600, 1047, 1181
ZrmI AGTACT 2 cut(s) 24, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.