Rw7G041720

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007798
Physical Location & Seq
Reverse (-)
65258501 .. 65259601
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041720.1

Sequence Viewer

Length: 219 bp
ATGGCTTCAACACCTCGACGAACCGGTGGAGGCCTCTTCGAAGGGCTCTACAGGGTCATCATGCGCCGCAACTCCGTCTACGTCACCTTCGTCATCGCTGGAGCTTTCCTCGGTGAACGGGCTGTGGATTATGGAGTTCATAGGCTGTGGGAGTACAATAACGTTGGGAAACGATATGAAGACATTCCAGTTTTGGGGCAAAGGCCAACAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

72

Amino Acids

8.22

Weight (kDa)

9.29

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 63 2.7e-21 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AciI CCGC 1 cut(s) 67
AclI AACGTT 1 cut(s) 162
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 194
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 1 cut(s) 9
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AoxI GGCC 2 cut(s) 31, 203
AsiGI ACCGGT 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 76, 125
AsuII TTCGAA 1 cut(s) 39
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpmI CTGGAG 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 188
BshFI GGCC 2 cut(s) 33, 205
BshTI ACCGGT 1 cut(s) 23
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 194
BsnI GGCC 2 cut(s) 33, 205
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 48
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 33, 205
BspT104I TTCGAA 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 39
BstHHI GCGC 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 33, 205
BtgZI GCGATG 1 cut(s) 79
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 23
Csp6I GTAC 1 cut(s) 154
CspAI ACCGGT 1 cut(s) 23
CviAII CATG 1 cut(s) 61
CviJI RGCY 7 cut(s) 5, 33, 46, 104, 122, 145, 205
CviKI_1 RGCY 7 cut(s) 5, 33, 46, 104, 122, 145, 205
CviQI GTAC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 62, 132, 141, 177
FatI CATG 1 cut(s) 60
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 67
GlaI GCGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 2 cut(s) 33, 205
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 76, 125
Hpy166II GTNNAC 2 cut(s) 79, 116
Hpy8I GTNNAC 2 cut(s) 79, 116
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 2 cut(s) 35, 97
HpyCH4IV ACGT 2 cut(s) 81, 162
HpySE526I ACGT 2 cut(s) 81, 162
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 4 cut(s) 37, 37, 84, 201
MaeII ACGT 2 cut(s) 81, 162
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 2 cut(s) 28, 191
MhlI GDGCHC 1 cut(s) 48
MnlI CCTC 4 cut(s) 23, 24, 44, 119
MroXI GAANNNNTTC 1 cut(s) 183
MspI CCGG 1 cut(s) 24
NlaIII CATG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 23
PkrI GCNGC 1 cut(s) 68
Psp1406I AACGTT 1 cut(s) 162
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 67
SduI GDGCHC 1 cut(s) 48
SetI ASST 5 cut(s) 16, 84, 89, 106, 165
SfcI CTRYAG 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 8 cut(s) 27, 36, 64, 73, 111, 122, 131, 200
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 1 cut(s) 67
StuI AGGCCT 1 cut(s) 33
TaiI ACGT 2 cut(s) 84, 165
TaqI TCGA 2 cut(s) 16, 39
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 69
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 128, 192
TspGWI ACGGA 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.