MD12G1036000.v1.1

Cytochrome b-c1 complex subunit 9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0007798
Physical Location & Seq
Forward (+)
3899103 .. 3901470
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1036000.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGATTCAGCGGCCCGAAGGAGCGGCGGTGGACTCTTCGAAGGCCTTTACAGGGTCATCATGCGCCGCAACTCCGTCTACGTCACCTTCGTCATCGCCGGCGCCTTCCTCGGCGAGCGGGCTGTAGATTATGGAGTTCATAAGCTGTGGGAGTACAATAATGTTGGGAAACGATATGAAGATATTTCAGTTCTGGGGACAAGGCAATCGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
UCR_UQCRX_QCR9

Protein Analysis

73

Amino Acids

8.16

Weight (kDa)

8.09

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCR_UQCRX_QCR9 PF05365 15 - 63 1.5e-21 Cytochrome b-c1 complex subunit 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 2 cut(s) 24, 118
AccI GTMKAC 1 cut(s) 78
AciI CCGC 5 cut(s) 11, 24, 27, 67, 118
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 52
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AoxI GGCC 2 cut(s) 12, 43
AspLEI GCGC 2 cut(s) 66, 104
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 105
BisI GCNGC 3 cut(s) 12, 25, 67
BlsI GCNGC 3 cut(s) 13, 26, 68
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 103
Bpu14I TTCGAA 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 52
BshFI GGCC 2 cut(s) 14, 45
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 2 cut(s) 14, 45
Bsp119I TTCGAA 1 cut(s) 39
BspACI CCGC 5 cut(s) 11, 24, 27, 67, 118
BspANI GGCC 2 cut(s) 14, 45
BspLI GGNNCC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 2 cut(s) 24, 118
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 100, 116, 120
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 66, 104
BstSFI CTRYAG 1 cut(s) 123
BsuRI GGCC 2 cut(s) 14, 45
BtgZI GCGATG 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 100, 116, 120
CfoI GCGC 2 cut(s) 66, 104
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 14, 45, 122, 145
CviKI_1 RGCY 4 cut(s) 14, 45, 122, 145
CviQI GTAC 1 cut(s) 154
DinI GGCGCC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 62, 132, 141, 177
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 111
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 12, 25, 67
Fsp4HI GCNGC 3 cut(s) 12, 25, 67
GlaI GCGC 2 cut(s) 65, 103
GluI GCNGC 3 cut(s) 12, 25, 67
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 14, 45
HapII CCGG 1 cut(s) 99
HhaI GCGC 2 cut(s) 66, 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 2 cut(s) 64, 102
HinP1I GCGC 2 cut(s) 64, 102
HinfI GANTC 2 cut(s) 5, 33
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 32, 79
Hpy188I TCNGA 1 cut(s) 211
Hpy8I GTNNAC 2 cut(s) 32, 79
HpyAV CCTTC 4 cut(s) 12, 35, 97, 115
HpyCH4IV ACGT 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 2 cut(s) 64, 102
KasI GGCGCC 1 cut(s) 101
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 3 cut(s) 37, 112, 179
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 82
MbiI CCGCTC 2 cut(s) 24, 118
MboII GAAGA 2 cut(s) 28, 191
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 1 cut(s) 119
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 99
NaeI GCCGGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 102
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 3 cut(s) 13, 26, 68
PleI GAGTC 1 cut(s) 27
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 13
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 3 cut(s) 12, 25, 67
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 27
SetI ASST 3 cut(s) 84, 89, 147
SfcI CTRYAG 1 cut(s) 123
SfoI GGCGCC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 39
SgeI CNNG 9 cut(s) 27, 64, 73, 111, 122, 127, 131, 206, 213
SgrAI CRCCGGYG 1 cut(s) 98
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 5 cut(s) 11, 24, 27, 67, 118
SspDI GGCGCC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 45
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 39
TatI WGTACW 1 cut(s) 153
TauI GCSGC 3 cut(s) 14, 27, 69
TfiI GAWTC 1 cut(s) 5
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 128, 192
TspGWI ACGGA 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.