AT3G53120

endosome transport via multivesicular body sorting pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008384
Physical Location & Seq
Reverse (-)
19690571 .. 19692578
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53120.1

Sequence Viewer

Length: 654 bp
ATGTTCAATTTCTGGGGATCAAAAGACCAACAACAAGGGCAATCTCGTCCTCAGGAAGCTTCTTCACAGTCGCCATGGTACTCGCCTTCTTTAGTTAGCTCGCCAAGCTCATCCCGGCCTCAAAGTTCAGGTCAGATTTCAGCACAAGTATCACCGGGTGAAGCAGCTGGCATTATCGTCTTCTTGAAAGACAAAAGCGTGGATGAACTCAGGAAGCTTCTCTCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAGTCCAGAATAATATCAAAGATGAGCTCCGTAGAGAAACATTGCAGCTAGCTAGAGACAACTTGGAGAAGGAGCCACAGATAATGGAGCTCAGAAACCAATGCAGAATTATCCGTACAACTGAGCTCGCAACTGCGCAAGAAAAGCTTAATGAGCTTGAGAGGCAAAAAGAAGAGATCCTCAAATTCTACTCCCCTGGTTCTCTTCTTCATAAACTTCAAGAGGCTATGAATCAGGTGGATGAAGAATCCGAAGCCCTGCAAGAAAAGTTCCTAGAGAAGGAGATTGATACAGCAGCATTTGTGCAGAAATACAAGAAGCTTCGTACTACCTATCATCGACGAGCATTGATCCATCTTGCCGCTAAAACGTCAAACATTTGA

Protein Analysis

217

Amino Acids

24.94

Weight (kDa)

6.86

Isoelectric Point (pI)

66.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mod_r PF07200 63 - 207 1.6e-41 Modifier of rudimentary (Mod(r)) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 408
AciI CCGC 1 cut(s) 633
AclWI GGATC 3 cut(s) 25, 442, 616
AcsI RAATTY 1 cut(s) 455
AdeI CACNNNGTG 1 cut(s) 158
AfaI GTAC 3 cut(s) 80, 388, 598
AfiI CCNNNNNNNGG 1 cut(s) 550
AgsI TTSAA 3 cut(s) 7, 187, 491
AjnI CCWGG 2 cut(s) 264, 466
Alw21I GWGCWC 3 cut(s) 300, 363, 399
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 3 cut(s) 25, 442, 616
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 3 cut(s) 164, 316, 566
ApoI RAATTY 1 cut(s) 455
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
AspLEI GCGC 1 cut(s) 409
AsuC2I CCSGG 2 cut(s) 115, 156
AsuHPI GGTGA 2 cut(s) 144, 170
AsuNHI GCTAGC 1 cut(s) 319
AxyI CCTNAGG 1 cut(s) 51
BanII GRGCYC 3 cut(s) 300, 363, 399
BbsI GAAGAC 1 cut(s) 172
Bbv12I GWGCWC 3 cut(s) 300, 363, 399
BbvI GCAGC 3 cut(s) 176, 328, 578
BccI CCATC 1 cut(s) 633
BciT130I CCWGG 2 cut(s) 266, 468
BcnI CCSGG 2 cut(s) 115, 156
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 3 cut(s) 320, 324, 545
BisI GCNGC 4 cut(s) 165, 317, 567, 633
BlsI GCNGC 4 cut(s) 166, 318, 568, 634
Bme1390I CCNGG 4 cut(s) 115, 156, 266, 468
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 4 cut(s) 115, 156, 266, 468
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 115, 156
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 74, 466
Bsc4I CCNNNNNNNGG 1 cut(s) 550
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 2 cut(s) 266, 468
BseDI CCNNGG 2 cut(s) 74, 466
BseGI GGATG 3 cut(s) 110, 208, 517
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 550
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 4 cut(s) 65, 223, 376, 384
BseXI GCAGC 3 cut(s) 176, 328, 578
BsgI GTGCAG 1 cut(s) 596
BshFI GGCC 1 cut(s) 118
BsiHKAI GWGCWC 3 cut(s) 300, 363, 399
BsiSI CCGG 2 cut(s) 115, 155
BslI CCNNNNNNNGG 1 cut(s) 550
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 3 cut(s) 300, 363, 399
Bsp143I GATC 3 cut(s) 17, 447, 621
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 1 cut(s) 633
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 4 cut(s) 64, 222, 375, 385
BspLI GGNNCC 1 cut(s) 345
BspOI GCTAGC 1 cut(s) 323
BspPI GGATC 3 cut(s) 25, 442, 616
BsrDI GCAATG 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 74, 466
BssMI GATC 3 cut(s) 17, 447, 621
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 266, 468
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 438, 480
BstAPI GCANNNNNTGC 1 cut(s) 250
BstC8I GCNNGC 4 cut(s) 101, 169, 321, 399
BstDEI CTNAG 4 cut(s) 51, 209, 362, 393
BstDSI CCRYGG 1 cut(s) 74
BstENI CCTNNNNNAGG 1 cut(s) 548
BstF5I GGATG 3 cut(s) 110, 208, 517
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 3 cut(s) 20, 450, 624
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 3 cut(s) 17, 447, 621
BstMWI GCNNNNNNNGC 5 cut(s) 105, 250, 415, 424, 433
BstNI CCWGG 2 cut(s) 266, 468
BstSCI CCNGG 4 cut(s) 113, 154, 264, 466
BstV1I GCAGC 3 cut(s) 176, 328, 578
BstV2I GAAGAC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 3 cut(s) 110, 208, 517
Cac8I GCNNGC 4 cut(s) 101, 169, 321, 399
CfoI GCGC 1 cut(s) 409
CsiI ACCWGGT 1 cut(s) 264
Csp6I GTAC 3 cut(s) 79, 387, 597
CviAII CATG 1 cut(s) 75
CviQI GTAC 3 cut(s) 79, 387, 597
DdeI CTNAG 4 cut(s) 51, 209, 362, 393
DpnI GATC 3 cut(s) 19, 449, 623
DpnII GATC 3 cut(s) 17, 447, 621
DraIII CACNNNGTG 1 cut(s) 158
Eam1104I CTCTTC 2 cut(s) 438, 480
EarI CTCTTC 2 cut(s) 438, 480
Ecl136II GAGCTC 3 cut(s) 298, 361, 397
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 3 cut(s) 300, 363, 399
Eco53kI GAGCTC 3 cut(s) 298, 361, 397
Eco81I CCTNAGG 1 cut(s) 51
EcoICRI GAGCTC 3 cut(s) 298, 361, 397
EcoNI CCTNNNNNAGG 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 264, 466
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 3 cut(s) 300, 363, 399
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 1 cut(s) 78
FaiI YATR 3 cut(s) 76, 483, 500
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 4 cut(s) 165, 317, 567, 633
FokI GGATG 3 cut(s) 97, 215, 524
FriOI GRGCYC 3 cut(s) 300, 363, 399
Fsp4HI GCNGC 4 cut(s) 165, 317, 567, 633
FspBI CTAG 3 cut(s) 320, 324, 545
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 1 cut(s) 408
GluI GCNGC 4 cut(s) 165, 317, 567, 633
HaeIII GGCC 1 cut(s) 118
HapII CCGG 2 cut(s) 115, 155
HhaI GCGC 1 cut(s) 409
Hin1II CATG 1 cut(s) 78
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HindIII AAGCTT 4 cut(s) 57, 215, 416, 590
HinfI GANTC 2 cut(s) 502, 518
HpaII CCGG 2 cut(s) 115, 155
HphI GGTGA 2 cut(s) 144, 170
Hpy188I TCNGA 4 cut(s) 135, 226, 365, 523
Hpy188III TCNNGA 6 cut(s) 53, 184, 211, 260, 277, 491
Hpy99I CGWCG 1 cut(s) 615
HpyAV CCTTC 3 cut(s) 96, 334, 544
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 4 cut(s) 316, 375, 532, 577
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 250, 415, 424, 433
HpyF3I CTNAG 4 cut(s) 51, 209, 362, 393
HpySE526I ACGT 1 cut(s) 641
Hsp92II CATG 1 cut(s) 78
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 3 cut(s) 17, 447, 621
LmnI GCTCC 3 cut(s) 303, 343, 358
Lsp1109I GCAGC 3 cut(s) 176, 328, 578
LweI GCATC 1 cut(s) 223
MabI ACCWGGT 1 cut(s) 264
MaeI CTAG 3 cut(s) 320, 324, 545
MaeII ACGT 1 cut(s) 641
MalI GATC 3 cut(s) 19, 449, 623
MboI GATC 3 cut(s) 17, 447, 621
MboII GAAGA 6 cut(s) 54, 172, 455, 467, 470, 527
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 3 cut(s) 300, 363, 399
MluCI AATT 4 cut(s) 7, 245, 378, 455
MnlI CCTC 5 cut(s) 60, 129, 426, 461, 487
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 2 cut(s) 115, 155
MspR9I CCNGG 4 cut(s) 115, 156, 266, 468
MvaI CCWGG 2 cut(s) 266, 468
MwoI GCNNNNNNNGC 5 cut(s) 105, 250, 415, 424, 433
NciI CCSGG 2 cut(s) 115, 156
NcoI CCATGG 1 cut(s) 74
NdeII GATC 3 cut(s) 17, 447, 621
NheI GCTAGC 1 cut(s) 319
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 345
NsbI TGCGCA 1 cut(s) 408
PfeI GAWTC 2 cut(s) 502, 518
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 4 cut(s) 166, 318, 568, 634
Psp124BI GAGCTC 3 cut(s) 300, 363, 399
Psp6I CCWGG 2 cut(s) 264, 466
PspGI CCWGG 2 cut(s) 264, 466
PspN4I GGNNCC 1 cut(s) 345
PsuI RGATCY 1 cut(s) 447
PsyI GACNNNGTC 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 3 cut(s) 80, 388, 598
RsaNI GTAC 3 cut(s) 79, 387, 597
SacI GAGCTC 3 cut(s) 300, 363, 399
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 4 cut(s) 165, 317, 567, 633
Sau3AI GATC 3 cut(s) 17, 447, 621
ScrFI CCNGG 4 cut(s) 115, 156, 266, 468
SduI GDGCHC 3 cut(s) 300, 363, 399
SexAI ACCWGGT 1 cut(s) 264
SfaNI GCATC 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 4 cut(s) 7, 245, 378, 455
SsiI CCGC 1 cut(s) 633
SspMI CTAG 3 cut(s) 320, 324, 545
SstI GAGCTC 3 cut(s) 300, 363, 399
StyD4I CCNGG 4 cut(s) 113, 154, 264, 466
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 1 cut(s) 644
TaqI TCGA 1 cut(s) 610
TasI AATT 4 cut(s) 7, 245, 378, 455
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 2 cut(s) 502, 518
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseI GCWGC 3 cut(s) 164, 316, 566
TspDTI ATGAA 4 cut(s) 219, 470, 515, 528
TspGWI ACGGA 2 cut(s) 290, 374
Tth111I GACNNNGTC 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 548
XapI RAATTY 1 cut(s) 455
XspI CTAG 3 cut(s) 320, 324, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.