Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008384

Physical Location & Seq

Genomic Coordinates Reverse (-)

11413982 .. 11416265

Gene Structure 2284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCCATGTTCAAGTTCTGGGGATCTCAGGAGGAACCTACTCAGCCGCGTCCGGAGGTTGGTACTCCTTCACAGTCATGGTACCCTCCATCTGTAGTTAGTTCTCCGACTTCTTCTCGCCCTGGGACGCCGAGTAGCACCTCGTCTAGCAGTATGAGTTACCAAAGGCCAACAGAAAGGGCACAGTCTGCGTTACATGTTTCTCCCGCCGAAGCTGCCGCTGTTATTTCCGTTCTGAAGGACAAGAGTGTTGAGGACCTACGGAAGCTTTTGTCTGACAAGAATGCATACCAGCAATTTTTTCTTTCGCTCGATCAGGTCAAAATTCAAAATAATCTAAGAGAGGAGCTACGGAGGGAAACTCTGCAGTTATCCAGGGAAAACTTGGAAAAAGAACCGCAGATGGTGGAACTTAGAAACCAGTGCAGAATAATTAGAACAACAGAGTTGGCTGCTGCTCAGGAGAGTCTAAATGAACTCGAGAGAAAGAAAGAAGAAACGTTGCAGCTATGTTCCCCGTCTTCTCTTCTTCAAAGGCTTCAAGAATCGATGAATACAACGGAGGAGGAATCTGAAGCTTTGCACCAGCAGCTCCTCGACAAGGAGGTTGATCGATCGGGGCTTTTGTGGAAAAGTACAAGAAGCTTCGTACCACTTACCACAAGCGAGCGCTTGTTCATCTTGCCGCAAAAACATCTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Mod_r

Protein Analysis

235

Amino Acids

26.73

Weight (kDa)

5.79

Isoelectric Point (pI)

76.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mod_r	PF07200	80 - 204	2e-27	Modifier of rudimentary (Mod(r)) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36680 AT2G36680 AT2G36680 AT2G36680 AT3G53120
fragaria_vesca	FvH4_6g17210
malus_domestica	MD12G1102900.v1.1 MD14G1097000.v1.1
prunus_persica	Prupe.7G123000_v2.0.a1
pyrus_communis	pycom12g10100 pycom14g09480
rosa_chinensis	RchiOBHm_Chr3g0471291
rosa_laevigata	RLG00000024190
rosa_multiflora	Rmu_sc0009082.1_g000004 Rmu_sc0015755.1_g000001 Rmu_sc0020748.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410100
rosa_rugosa	Rorug03G0116800
rosa_samantha	Rh3AG166300 Rh3BG191700 Rh3CG182000 Rh3DG184000
rosa_wichuraiana	Rw3G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	81
AccII	CGCG	1 cut(s)	49
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	5 cut(s)	47, 207, 219, 398, 686
AclI	AACGTT	1 cut(s)	500
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	2 cut(s)	257, 594
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	4 cut(s)	64, 83, 637, 651
AfeI	AGCGCT	1 cut(s)	671
AfiI	CCNNNNNNNGG	2 cut(s)	59, 601
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	5 cut(s)	13, 329, 533, 542, 701
AjnI	CCWGG	2 cut(s)	121, 374
AluBI	AGCT	7 cut(s)	215, 268, 349, 508, 578, 592, 645
AluI	AGCT	7 cut(s)	215, 268, 349, 508, 578, 592, 645
AlwI	GGATC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	479
Aor13HI	TCCGGA	1 cut(s)	52
Aor51HI	AGCGCT	1 cut(s)	671
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	5 cut(s)	215, 452, 455, 505, 589
ApoI	RAATTY	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	5 cut(s)	202, 439, 442, 517, 601
BccI	CCATC	2 cut(s)	97, 397
BciT130I	CCWGG	2 cut(s)	123, 376
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	2 cut(s)	93, 365
BfoI	RGCGCY	1 cut(s)	673
BisI	GCNGC	8 cut(s)	47, 216, 219, 453, 456, 506, 590, 686
BlsI	GCNGC	8 cut(s)	48, 217, 220, 454, 457, 507, 591, 687
Bme1390I	CCNGG	2 cut(s)	123, 376
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	36, 83
BmrFI	CCNGG	2 cut(s)	123, 376
BpiI	GAAGAC	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
Bpu10I	CCTNAGC	1 cut(s)	459
Bsa29I	ATCGAT	2 cut(s)	548, 613
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	121, 122, 375
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 601
Bse1I	ACTGG	1 cut(s)	421
BseAI	TCCGGA	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	123, 376
BseCI	ATCGAT	2 cut(s)	548, 613
BseDI	CCNNGG	3 cut(s)	121, 122, 375
BseLI	CCNNNNNNNGG	2 cut(s)	59, 601
BseMII	CTCAG	3 cut(s)	41, 56, 473
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	3 cut(s)	359, 578, 584
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	5 cut(s)	202, 439, 442, 517, 601
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	617
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	81
BshVI	ATCGAT	2 cut(s)	548, 613
BsiEI	CGRYCG	1 cut(s)	617
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	59, 601
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	4 cut(s)	23, 313, 610, 614
BspACI	CCGC	5 cut(s)	47, 207, 219, 398, 686
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	3 cut(s)	40, 55, 472
BspDI	ATCGAT	2 cut(s)	548, 613
BspEI	TCCGGA	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	36, 83
BspMAI	CTGCAG	1 cut(s)	369
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	3 cut(s)	121, 122, 375
BssMI	GATC	4 cut(s)	23, 313, 610, 614
BssNI	GRCGYC	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	123, 376
Bst4CI	ACNGT	2 cut(s)	75, 186
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	5 cut(s)	27, 42, 338, 413, 459
BstENI	CCTNNNNNAGG	1 cut(s)	599
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	673
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	4 cut(s)	26, 316, 613, 617
BstMBI	GATC	4 cut(s)	23, 313, 610, 614
BstMCI	CGRYCG	1 cut(s)	617
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 215, 589
BstNI	CCWGG	2 cut(s)	123, 376
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	121, 374
BstSFI	CTRYAG	2 cut(s)	93, 365
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	5 cut(s)	202, 439, 442, 517, 601
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
Bsu15I	ATCGAT	2 cut(s)	548, 613
BsuRI	GGCC	1 cut(s)	169
BsuTUI	ATCGAT	2 cut(s)	548, 613
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	668
CfoI	GCGC	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	256
ClaI	ATCGAT	2 cut(s)	548, 613
CseI	GACGC	2 cut(s)	38, 136
Csp6I	GTAC	4 cut(s)	63, 82, 636, 650
CviAII	CATG	3 cut(s)	7, 78, 197
CviQI	GTAC	4 cut(s)	63, 82, 636, 650
DdeI	CTNAG	5 cut(s)	27, 42, 338, 413, 459
DpnI	GATC	4 cut(s)	25, 315, 612, 616
DpnII	GATC	4 cut(s)	23, 313, 610, 614
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	671
Eco57I	CTGAAG	2 cut(s)	257, 594
Eco88I	CYCGRG	1 cut(s)	479
EcoNI	CCTNNNNNAGG	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	121, 374
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	3 cut(s)	10, 81, 200
FaiI	YATR	6 cut(s)	8, 79, 155, 198, 289, 511
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	3 cut(s)	6, 77, 196
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	8 cut(s)	47, 216, 219, 453, 456, 506, 590, 686
Fsp4HI	GCNGC	8 cut(s)	47, 216, 219, 453, 456, 506, 590, 686
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	8 cut(s)	47, 216, 219, 453, 456, 506, 590, 686
HaeII	RGCGCY	1 cut(s)	673
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	38, 136
HhaI	GCGC	1 cut(s)	672
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	10, 81, 200
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HindIII	AAGCTT	3 cut(s)	266, 576, 643
HinfI	GANTC	3 cut(s)	466, 545, 569
HpaII	CCGG	1 cut(s)	53
Hpy188I	TCNGA	4 cut(s)	108, 237, 277, 574
Hpy188III	TCNNGA	5 cut(s)	29, 53, 461, 481, 542
HpyAV	CCTTC	2 cut(s)	78, 232
HpyCH4III	ACNGT	2 cut(s)	75, 186
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	5 cut(s)	287, 367, 426, 505, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 215, 589
HpyF3I	CTNAG	5 cut(s)	27, 42, 338, 413, 459
HpySE526I	ACGT	1 cut(s)	500
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	3 cut(s)	10, 81, 200
HspAI	GCGC	1 cut(s)	670
Kpn2I	TCCGGA	1 cut(s)	52
KpnI	GGTACC	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	23, 313, 610, 614
LmnI	GCTCC	2 cut(s)	346, 597
Lsp1109I	GCAGC	5 cut(s)	202, 439, 442, 517, 601
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	2 cut(s)	158, 192
MalI	GATC	4 cut(s)	25, 315, 612, 616
MboI	GATC	4 cut(s)	23, 313, 610, 614
MboII	GAAGA	6 cut(s)	105, 506, 513, 518, 521, 689
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	3 cut(s)	296, 324, 432
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	289
MroI	TCCGGA	1 cut(s)	52
MslI	CAYNNNNRTG	1 cut(s)	76
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	123, 376
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	2 cut(s)	123, 376
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	188, 215, 589
NdeII	GATC	4 cut(s)	23, 313, 610, 614
NlaIII	CATG	3 cut(s)	10, 81, 200
NlaIV	GGNNCC	2 cut(s)	36, 83
NmeAIII	GCCGAG	1 cut(s)	156
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	479
PasI	CCCWGGG	1 cut(s)	122
PciI	ACATGT	1 cut(s)	196
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	545, 569
PkrI	GCNGC	8 cut(s)	48, 217, 220, 454, 457, 507, 591, 687
Ple19I	CGATCG	1 cut(s)	617
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PpuMI	RGGWCCY	1 cut(s)	256
PscI	ACATGT	1 cut(s)	196
Psp1406I	AACGTT	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	121, 374
PspGI	CCWGG	2 cut(s)	121, 374
PspN4I	GGNNCC	2 cut(s)	36, 83
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	23
PvuI	CGATCG	1 cut(s)	617
RsaI	GTAC	4 cut(s)	64, 83, 637, 651
RsaNI	GTAC	4 cut(s)	63, 82, 636, 650
RseI	CAYNNNNRTG	1 cut(s)	76
SatI	GCNGC	8 cut(s)	47, 216, 219, 453, 456, 506, 590, 686
Sau3AI	GATC	4 cut(s)	23, 313, 610, 614
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	2 cut(s)	123, 376
SduI	GDGCHC	1 cut(s)	184
SfcI	CTRYAG	2 cut(s)	93, 365
Sfr274I	CTCGAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	296, 324, 432
SsiI	CCGC	5 cut(s)	47, 207, 219, 398, 686
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	121, 374
TaaI	ACNGT	2 cut(s)	75, 186
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	5 cut(s)	312, 480, 548, 597, 613
TasI	AATT	3 cut(s)	296, 324, 432
TatI	WGTACW	1 cut(s)	635
TauI	GCSGC	3 cut(s)	49, 221, 688
TfiI	GAWTC	2 cut(s)	545, 569
TscAI	CASTG	1 cut(s)	428
TseI	GCWGC	5 cut(s)	215, 452, 455, 505, 589
TspDTI	ATGAA	3 cut(s)	489, 566, 667
TspGWI	ACGGA	4 cut(s)	220, 277, 367, 575
TspRI	CASTG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	256
XagI	CCTNNNNNAGG	1 cut(s)	599
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XhoI	CTCGAG	1 cut(s)	479
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.