Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020748.1

Orthogroup ID

OG0008384

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1991

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020748.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 460 bp

tgttgatgaactacgaaagcttttgtctgacaaggatgcataccatcaatttttcctgtcgctcgatcaggtcaaggttcaaaataatttaagggaagagctacgaaaggaaactctgcagttaactagggaaaacttggaaaaggaaccgcgcatggtggaacttagaaaccagtgcagaataattagaacgacagagttggctgccgcgcaagagaagctaaatgagcttgagcgacagaaagaagaaactttgaagttatgttcaccttcttcccttctccaaaggcttcaagaagcaatgaataagacggaggaggaatctgaaaacctgcacaggcaactcctcgatagtgaaatcgatcttgggacttttgttccgaaatataagaagctccgcaacacttaccaccggcgagcgcttgttcatcttgcagcaaaaacatcttcaattggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Mod_r

Protein Analysis

152

Amino Acids

17.94

Weight (kDa)

7.93

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36680 AT2G36680 AT2G36680 AT2G36680 AT3G53120
fragaria_vesca	FvH4_6g17210
malus_domestica	MD12G1102900.v1.1 MD14G1097000.v1.1
prunus_persica	Prupe.7G123000_v2.0.a1
pyrus_communis	pycom12g10100 pycom14g09480
rosa_chinensis	RchiOBHm_Chr3g0471291
rosa_laevigata	RLG00000024190
rosa_multiflora	Rmu_sc0009082.1_g000004 Rmu_sc0015755.1_g000001 Rmu_sc0020748.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410100
rosa_rugosa	Rorug03G0116800
rosa_samantha	Rh3AG166300 Rh3BG191700 Rh3CG182000 Rh3DG184000
rosa_wichuraiana	Rw3G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccII	CGCG	2 cut(s)	152, 210
AciI	CCGC	3 cut(s)	150, 208, 398
AfeI	AGCGCT	1 cut(s)	421
AgsI	TTSAA	4 cut(s)	81, 257, 294, 451
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AluBI	AGCT	5 cut(s)	20, 101, 221, 230, 395
AluI	AGCT	5 cut(s)	20, 101, 221, 230, 395
Aor51HI	AGCGCT	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	204, 435
AspLEI	GCGC	3 cut(s)	154, 212, 422
AsuHPI	GGTGA	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	191, 447
BccI	CCATC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	127
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	205, 208, 436
BlsI	GCNGC	3 cut(s)	206, 209, 437
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	361
BseGI	GGATG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	2 cut(s)	330, 336
BseXI	GCAGC	2 cut(s)	191, 447
BsgI	GTGCAG	2 cut(s)	197, 318
Bsh1236I	CGCG	2 cut(s)	152, 210
BshVI	ATCGAT	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	65, 362
BspACI	CCGC	3 cut(s)	150, 208, 398
BspDI	ATCGAT	1 cut(s)	361
BspFNI	CGCG	2 cut(s)	152, 210
BspLI	GGNNCC	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	412
BssMI	GATC	2 cut(s)	65, 362
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	2 cut(s)	152, 210
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	3 cut(s)	154, 212, 422
BstKTI	GATC	2 cut(s)	68, 365
BstMBI	GATC	2 cut(s)	65, 362
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 227
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	2 cut(s)	152, 210
BstV1I	GCAGC	2 cut(s)	191, 447
Bsu15I	ATCGAT	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	3 cut(s)	154, 212, 422
Cfr10I	RCCGGY	1 cut(s)	412
ClaI	ATCGAT	1 cut(s)	361
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	8 cut(s)	20, 101, 204, 221, 230, 290, 395, 457
CviKI_1	RGCY	8 cut(s)	20, 101, 204, 221, 230, 290, 395, 457
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	2 cut(s)	67, 364
DpnII	GATC	2 cut(s)	65, 362
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco47III	AGCGCT	1 cut(s)	421
EcoT22I	ATGCAT	1 cut(s)	41
FaeI	CATG	1 cut(s)	158
FaiI	YATR	4 cut(s)	41, 156, 263, 388
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	205, 208, 436
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	205, 208, 436
FspBI	CTAG	1 cut(s)	127
GlaI	GCGC	3 cut(s)	153, 211, 421
GluI	GCNGC	3 cut(s)	205, 208, 436
HaeII	RGCGCY	1 cut(s)	423
HapII	CCGG	1 cut(s)	413
HhaI	GCGC	3 cut(s)	154, 212, 422
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	3 cut(s)	152, 210, 420
HinP1I	GCGC	3 cut(s)	152, 210, 420
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	1 cut(s)	321
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	124, 267
Hpy188I	TCNGA	3 cut(s)	29, 326, 382
Hpy188III	TCNNGA	1 cut(s)	294
Hpy8I	GTNNAC	2 cut(s)	124, 267
HpyAV	CCTTC	2 cut(s)	280, 288
HpyCH4V	TGCA	5 cut(s)	39, 119, 178, 335, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 227
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	3 cut(s)	152, 210, 420
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	65, 362
LguI	GCTCTTC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	6 cut(s)	54, 69, 186, 323, 345, 426
Lsp1109I	GCAGC	2 cut(s)	191, 447
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	127
MalI	GATC	2 cut(s)	67, 364
MboI	GATC	2 cut(s)	65, 362
MboII	GAAGA	4 cut(s)	108, 258, 265, 439
MfeI	CAATTG	1 cut(s)	451
MluCI	AATT	4 cut(s)	48, 86, 184, 451
MnlI	CCTC	3 cut(s)	308, 311, 357
Mph1103I	ATGCAT	1 cut(s)	41
MseI	TTAA	2 cut(s)	90, 123
MspI	CCGG	1 cut(s)	413
MunI	CAATTG	1 cut(s)	451
MvnI	CGCG	2 cut(s)	152, 210
MwoI	GCNNNNNNNGC	2 cut(s)	218, 227
NdeII	GATC	2 cut(s)	65, 362
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	206, 209, 437
PspN4I	GGNNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	90, 123
SatI	GCNGC	3 cut(s)	205, 208, 436
Sau3AI	GATC	2 cut(s)	65, 362
SetI	ASST	9 cut(s)	22, 73, 79, 103, 223, 232, 272, 334, 397
SfaNI	GCATC	1 cut(s)	26
SfcI	CTRYAG	1 cut(s)	117
SgrAI	CRCCGGYG	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	4 cut(s)	48, 86, 184, 451
SsiI	CCGC	3 cut(s)	150, 208, 398
SspMI	CTAG	1 cut(s)	127
TaqI	TCGA	3 cut(s)	64, 349, 361
TasI	AATT	4 cut(s)	48, 86, 184, 451
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	90, 123
Tru9I	TTAA	2 cut(s)	90, 123
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	2 cut(s)	204, 435
TspDTI	ATGAA	3 cut(s)	22, 318, 417
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	180
XspI	CTAG	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.