Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008384

Physical Location & Seq

Genomic Coordinates Reverse (-)

16086455 .. 16089440

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1102900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCCATGTTCAAGTTCTGGGGATCTCAGGAGGAGCCCACTCAGCCGCGACCGGAGGTTGTTACTCCTTCACAGTCATGGTACCCTCCATCTGTAGTTAACTCTCCGACCTCTTCTCGCCCTGGGACGCCGAGCAGCACCTCATCTAGCAGTATGAGTTACCAAAGGCCAACAGAAAGGGCACAATCTCCGTTACATGTTTCGCCGGCCGAAGCTGCCGGTGTTATTTCTGTTTTGAAGGACAAGAGTGTTGAGGACCTACGGAAGCTTTTGTCTGACAAGAATGCATACCAGCAATTTTTTCTTTCACTCGATCAGGTCAAAATTCAAAATAATCTAAGAGAGGAGCTACGGAGGGAAACTCTGCAGTTATCCAGGGAAAACTTGGAAAAAGAACCACAGATGGTGGAACTTAGAAACCAGTGCAGAATAATTAGAACAACAGAGTTGGCTGCCGCTCAGGAGAAGCTAAATGAGCTCGAGAGAAAGAAAGAAGAAATGTTGAAGCTGTGTTCCCCGTCTTCTCTTCTTCAAAGGCTTCAAGAATCGATGAATACGACAGAGGAGGAATCGGAAGCTCTGCACGAGCAGCTTCTCGACAAGGAGGTTGATCTCGGGGCTTTTGTGGAGAAATACAAGAAGCTTCGTACCACTTACCACAAGCGAGCGCTCGTTCATCTCGCAGCAAAAACATCTTCAGTAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Mod_r

Protein Analysis

236

Amino Acids

26.82

Weight (kDa)

6.93

Isoelectric Point (pI)

67.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mod_r	PF07200	80 - 224	2.5e-38	Modifier of rudimentary (Mod(r)) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36680 AT2G36680 AT2G36680 AT2G36680 AT3G53120
fragaria_vesca	FvH4_6g17210
malus_domestica	MD12G1102900.v1.1 MD14G1097000.v1.1
prunus_persica	Prupe.7G123000_v2.0.a1
pyrus_communis	pycom12g10100 pycom14g09480
rosa_chinensis	RchiOBHm_Chr3g0471291
rosa_laevigata	RLG00000024190
rosa_multiflora	Rmu_sc0009082.1_g000004 Rmu_sc0015755.1_g000001 Rmu_sc0020748.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410100
rosa_rugosa	Rorug03G0116800
rosa_samantha	Rh3AG166300 Rh3BG191700 Rh3CG182000 Rh3DG184000
rosa_wichuraiana	Rw3G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	458
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	47, 456
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	83, 649
AfeI	AGCGCT	1 cut(s)	669
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	6 cut(s)	13, 238, 329, 505, 533, 542
AjnI	CCWGG	2 cut(s)	121, 374
AluBI	AGCT	9 cut(s)	215, 268, 349, 469, 478, 508, 578, 592, 643
AluI	AGCT	9 cut(s)	215, 268, 349, 469, 478, 508, 578, 592, 643
Alw21I	GWGCWC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	31
Ama87I	CYCGRG	2 cut(s)	479, 614
Aor51HI	AGCGCT	1 cut(s)	669
AoxI	GGCC	2 cut(s)	167, 207
ApeKI	GCWGC	5 cut(s)	135, 215, 452, 589, 683
ApoI	RAATTY	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	256
AvaI	CYCGRG	2 cut(s)	479, 614
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	81
BanII	GRGCYC	2 cut(s)	39, 480
BauI	CACGAG	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	5 cut(s)	147, 202, 439, 601, 695
BccI	CCATC	2 cut(s)	97, 397
BciT130I	CCWGG	2 cut(s)	123, 376
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	2 cut(s)	93, 365
BfoI	RGCGCY	1 cut(s)	671
BisI	GCNGC	7 cut(s)	47, 136, 216, 453, 456, 590, 684
BlsI	GCNGC	7 cut(s)	48, 137, 217, 454, 457, 591, 685
Bme1390I	CCNGG	2 cut(s)	123, 376
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	2 cut(s)	479, 614
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	36, 83
BmrFI	CCNGG	2 cut(s)	123, 376
BpiI	GAAGAC	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
Bpu10I	CCTNAGC	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	121, 122, 375
BsaWI	WCCGGW	1 cut(s)	52
Bse118I	RCCGGY	2 cut(s)	205, 218
Bse1I	ACTGG	1 cut(s)	421
BseBI	CCWGG	2 cut(s)	123, 376
BseCI	ATCGAT	1 cut(s)	548
BseDI	CCNNGG	3 cut(s)	121, 122, 375
BseMII	CTCAG	3 cut(s)	41, 56, 473
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	3 cut(s)	47, 359, 578
BseSI	GKGCMC	1 cut(s)	184
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	5 cut(s)	147, 202, 439, 601, 695
BsgI	GTGCAG	2 cut(s)	445, 566
Bsh1236I	CGCG	1 cut(s)	49
Bsh1285I	CGRYCG	2 cut(s)	53, 210
BshFI	GGCC	2 cut(s)	169, 209
BshNI	GGYRCC	1 cut(s)	81
BshVI	ATCGAT	1 cut(s)	548
BsiEI	CGRYCG	2 cut(s)	53, 210
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	2 cut(s)	479, 614
BsiSI	CCGG	3 cut(s)	53, 206, 219
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	169, 209
BsoBI	CYCGRG	2 cut(s)	479, 614
Bsp1286I	GDGCHC	3 cut(s)	39, 184, 480
Bsp143I	GATC	3 cut(s)	23, 313, 610
BspACI	CCGC	2 cut(s)	47, 456
BspANI	GGCC	2 cut(s)	169, 209
BspCNI	CTCAG	3 cut(s)	40, 55, 472
BspDI	ATCGAT	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	36, 83
BspMAI	CTGCAG	1 cut(s)	369
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	458
BsrFI	RCCGGY	2 cut(s)	205, 218
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	2 cut(s)	205, 218
BssECI	CCNNGG	3 cut(s)	121, 122, 375
BssMI	GATC	3 cut(s)	23, 313, 610
BssNI	GRCGYC	1 cut(s)	128
BssSI	CACGAG	1 cut(s)	584
Bst2BI	CACGAG	1 cut(s)	584
Bst2UI	CCWGG	2 cut(s)	123, 376
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	2 cut(s)	118, 531
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	207, 666
BstDEI	CTNAG	5 cut(s)	27, 42, 338, 413, 459
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	3 cut(s)	26, 316, 613
BstMBI	GATC	3 cut(s)	23, 313, 610
BstMCI	CGRYCG	2 cut(s)	53, 210
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 215, 475, 589
BstNI	CCWGG	2 cut(s)	123, 376
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	121, 374
BstSFI	CTRYAG	2 cut(s)	93, 365
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	5 cut(s)	147, 202, 439, 601, 695
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BstZI	CGGCCG	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	169, 209
BsuTUI	ATCGAT	1 cut(s)	548
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	2 cut(s)	207, 666
CfoI	GCGC	1 cut(s)	670
Cfr10I	RCCGGY	2 cut(s)	205, 218
Cfr13I	GGNCC	1 cut(s)	256
ClaI	ATCGAT	1 cut(s)	548
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	82, 648
CviAII	CATG	3 cut(s)	7, 78, 197
CviQI	GTAC	2 cut(s)	82, 648
DdeI	CTNAG	5 cut(s)	27, 42, 338, 413, 459
DpnI	GATC	3 cut(s)	25, 315, 612
DpnII	GATC	3 cut(s)	23, 313, 610
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	118, 531
EarI	CTCTTC	2 cut(s)	118, 531
Ecl136II	GAGCTC	1 cut(s)	478
EclXI	CGGCCG	1 cut(s)	207
Eco24I	GRGCYC	2 cut(s)	39, 480
Eco47I	GGWCC	1 cut(s)	256
Eco47III	AGCGCT	1 cut(s)	669
Eco52I	CGGCCG	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	681
Eco88I	CYCGRG	2 cut(s)	479, 614
EcoICRI	GAGCTC	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	121, 374
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	2 cut(s)	39, 480
FaeI	CATG	3 cut(s)	10, 81, 200
FaiI	YATR	5 cut(s)	8, 79, 155, 198, 289
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	3 cut(s)	6, 77, 196
Fnu4HI	GCNGC	7 cut(s)	47, 136, 216, 453, 456, 590, 684
FriOI	GRGCYC	2 cut(s)	39, 480
Fsp4HI	GCNGC	7 cut(s)	47, 136, 216, 453, 456, 590, 684
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	7 cut(s)	47, 136, 216, 453, 456, 590, 684
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	2 cut(s)	169, 209
HapII	CCGG	3 cut(s)	53, 206, 219
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	10, 81, 200
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	2 cut(s)	266, 641
HinfI	GANTC	2 cut(s)	545, 569
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	3 cut(s)	53, 206, 219
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	108, 277, 574
Hpy188III	TCNNGA	5 cut(s)	29, 461, 481, 542, 596
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	78, 232
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	287, 367, 426, 583
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 215, 475, 589
HpyF3I	CTNAG	5 cut(s)	27, 42, 338, 413, 459
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	3 cut(s)	10, 81, 200
HspAI	GCGC	1 cut(s)	668
KpnI	GGTACC	1 cut(s)	85
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	23, 313, 610
LmnI	GCTCC	2 cut(s)	34, 346
Lsp1109I	GCAGC	5 cut(s)	147, 202, 439, 601, 695
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	61, 158, 192
MalI	GATC	3 cut(s)	25, 315, 612
MbiI	CCGCTC	1 cut(s)	458
MboI	GATC	3 cut(s)	23, 313, 610
MboII	GAAGA	6 cut(s)	105, 506, 513, 518, 521, 687
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	3 cut(s)	39, 184, 480
MluCI	AATT	3 cut(s)	296, 324, 432
MmeI	TCCRAC	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	289
MroNI	GCCGGC	1 cut(s)	205
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	76
MspI	CCGG	3 cut(s)	53, 206, 219
MspR9I	CCNGG	2 cut(s)	123, 376
Mva1269I	GAATGC	1 cut(s)	289
MvaI	CCWGG	2 cut(s)	123, 376
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	4 cut(s)	43, 215, 475, 589
NaeI	GCCGGC	1 cut(s)	207
NdeII	GATC	3 cut(s)	23, 313, 610
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	10, 81, 200
NlaIV	GGNNCC	2 cut(s)	36, 83
NmeAIII	GCCGAG	1 cut(s)	156
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	479
PasI	CCCWGGG	1 cut(s)	122
PciI	ACATGT	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PctI	GAATGC	1 cut(s)	289
PdiI	GCCGGC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	545, 569
PkrI	GCNGC	7 cut(s)	48, 137, 217, 454, 457, 591, 685
PpuMI	RGGWCCY	1 cut(s)	256
PscI	ACATGT	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	121, 374
PspGI	CCWGG	2 cut(s)	121, 374
PspN4I	GGNNCC	2 cut(s)	36, 83
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	2 cut(s)	83, 649
RsaNI	GTAC	2 cut(s)	82, 648
RseI	CAYNNNNRTG	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	7 cut(s)	47, 136, 216, 453, 456, 590, 684
Sau3AI	GATC	3 cut(s)	23, 313, 610
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	123, 376
SduI	GDGCHC	3 cut(s)	39, 184, 480
SfcI	CTRYAG	2 cut(s)	93, 365
Sfr274I	CTCGAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	296, 324, 432
SsiI	CCGC	2 cut(s)	47, 456
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	121, 374
TaaI	ACNGT	1 cut(s)	75
TaqI	TCGA	4 cut(s)	312, 480, 548, 597
TasI	AATT	3 cut(s)	296, 324, 432
TauI	GCSGC	2 cut(s)	49, 458
TfiI	GAWTC	2 cut(s)	545, 569
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	428
TseI	GCWGC	5 cut(s)	135, 215, 452, 589, 683
TspDTI	ATGAA	2 cut(s)	566, 665
TspGWI	ACGGA	3 cut(s)	180, 277, 367
TspRI	CASTG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XhoI	CTCGAG	1 cut(s)	479
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.