Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009082.1

Orthogroup ID

OG0008384

Physical Location & Seq

Genomic Coordinates Reverse (-)

7592 .. 11535

Gene Structure 3944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009082.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgttcaaattctgggtatcacaggagccacaagctcagccacgtcctgaggatgcttcagcacagcagtcctattatcctcactctgttaactccccgagctcttctcgtcctttaactccgagtagaacctcttccgcttccaatttgagttctaggggtaactccccctcacctgtttctcccaccgaggctgccggtgttattgcttctttgaaggacaaaagggaagagctacgaaaggaaactctgcagttaactagggaaaacttggaaaaggaaccgcgcatggtggaacttagaaaccagtgcagaataattagaacgacagagttggctgccgcgcaagagaagctaaatgagcttgagcgacagaaagaagaaactttgaagttatgttcaccttcttcccttctccaaaggcttcaagaagcaatgaataagacggaggaggaatctgaaaacctgcacaggcaactcctcgatagtgaaatcgatcttgggacttttgttccgaaatataagaagctccgcaacacttaccaccggcgagcgcttgttcatcttgcagcaaaaacatcttcaattggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Mod_r

Protein Analysis

197

Amino Acids

22.37

Weight (kDa)

9.1

Isoelectric Point (pI)

77.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36680 AT2G36680 AT2G36680 AT2G36680 AT3G53120
fragaria_vesca	FvH4_6g17210
malus_domestica	MD12G1102900.v1.1 MD14G1097000.v1.1
prunus_persica	Prupe.7G123000_v2.0.a1
pyrus_communis	pycom12g10100 pycom14g09480
rosa_chinensis	RchiOBHm_Chr3g0471291
rosa_laevigata	RLG00000024190
rosa_multiflora	Rmu_sc0009082.1_g000004 Rmu_sc0015755.1_g000001 Rmu_sc0020748.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410100
rosa_rugosa	Rorug03G0116800
rosa_samantha	Rh3AG166300 Rh3BG191700 Rh3CG182000 Rh3DG184000
rosa_wichuraiana	Rw3G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	474
AccII	CGCG	2 cut(s)	286, 344
AciI	CCGC	4 cut(s)	138, 284, 342, 532
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	42
AfeI	AGCGCT	1 cut(s)	555
AgsI	TTSAA	5 cut(s)	7, 217, 391, 428, 585
AjiI	CACGTC	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	6 cut(s)	35, 102, 235, 355, 364, 529
AluI	AGCT	6 cut(s)	35, 102, 235, 355, 364, 529
Alw21I	GWGCWC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	97
Aor51HI	AGCGCT	1 cut(s)	555
ApeKI	GCWGC	3 cut(s)	194, 338, 569
ApoI	RAATTY	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	133
AspLEI	GCGC	3 cut(s)	288, 346, 556
AsuHPI	GGTGA	2 cut(s)	165, 393
AvaI	CYCGRG	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	181, 325, 581
BfaI	CTAG	2 cut(s)	156, 261
BfmI	CTRYAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	4 cut(s)	195, 339, 342, 570
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	4 cut(s)	196, 340, 343, 571
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	27, 282
BmsI	GCATC	1 cut(s)	43
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	189
Bse118I	RCCGGY	2 cut(s)	197, 546
Bse1I	ACTGG	1 cut(s)	307
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	441
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	39, 50
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	2 cut(s)	464, 470
BseXI	GCAGC	3 cut(s)	181, 325, 581
BsgI	GTGCAG	2 cut(s)	331, 452
Bsh1236I	CGCG	2 cut(s)	286, 344
BshVI	ATCGAT	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	198, 547
BslFI	GGGAC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	517
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	496
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	4 cut(s)	138, 284, 342, 532
BspCNI	CTCAG	2 cut(s)	40, 49
BspDI	ATCGAT	1 cut(s)	495
BspFNI	CGCG	2 cut(s)	286, 344
BspLI	GGNNCC	2 cut(s)	27, 282
BspMAI	CTGCAG	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	474
BspQI	GCTCTTC	2 cut(s)	109, 225
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	2 cut(s)	197, 546
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	2 cut(s)	197, 546
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	496
Bst6I	CTCTTC	3 cut(s)	109, 139, 225
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	3 cut(s)	36, 48, 299
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	2 cut(s)	286, 344
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	3 cut(s)	288, 346, 556
BstKTI	GATC	1 cut(s)	499
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 361
BstSFI	CTRYAG	1 cut(s)	251
BstUI	CGCG	2 cut(s)	286, 344
BstV1I	GCAGC	3 cut(s)	181, 325, 581
Bsu15I	ATCGAT	1 cut(s)	495
Bsu36I	CCTNAGG	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	495
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	3 cut(s)	288, 346, 556
Cfr10I	RCCGGY	2 cut(s)	197, 546
ClaI	ATCGAT	1 cut(s)	495
CviAII	CATG	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	36, 48, 299
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eam1104I	CTCTTC	3 cut(s)	109, 139, 225
EarI	CTCTTC	3 cut(s)	109, 139, 225
Ecl136II	GAGCTC	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	104
Eco47III	AGCGCT	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	42
Eco81I	CCTNAGG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	1 cut(s)	292
FaiI	YATR	3 cut(s)	290, 397, 522
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	195, 339, 342, 570
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	195, 339, 342, 570
FspBI	CTAG	2 cut(s)	156, 261
GlaI	GCGC	3 cut(s)	287, 345, 555
GluI	GCNGC	4 cut(s)	195, 339, 342, 570
HaeII	RGCGCY	1 cut(s)	557
HapII	CCGG	2 cut(s)	198, 547
HhaI	GCGC	3 cut(s)	288, 346, 556
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	3 cut(s)	286, 344, 554
HinP1I	GCGC	3 cut(s)	286, 344, 554
HincII	GTYRAC	2 cut(s)	91, 258
HindII	GTYRAC	2 cut(s)	91, 258
HinfI	GANTC	1 cut(s)	455
HpaI	GTTAAC	2 cut(s)	91, 258
HpaII	CCGG	2 cut(s)	198, 547
HphI	GGTGA	2 cut(s)	165, 393
Hpy166II	GTNNAC	3 cut(s)	91, 258, 401
Hpy188I	TCNGA	3 cut(s)	123, 460, 516
Hpy188III	TCNNGA	2 cut(s)	47, 428
Hpy8I	GTNNAC	3 cut(s)	91, 258, 401
HpyAV	CCTTC	3 cut(s)	211, 414, 422
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	253, 312, 469, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 361
HpyF3I	CTNAG	3 cut(s)	36, 48, 299
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	3 cut(s)	286, 344, 554
KspAI	GTTAAC	2 cut(s)	91, 258
Kzo9I	GATC	1 cut(s)	496
LguI	GCTCTTC	2 cut(s)	109, 225
LmnI	GCTCC	2 cut(s)	25, 534
LpnPI	CCDG	8 cut(s)	8, 60, 189, 211, 320, 457, 479, 560
Lsp1109I	GCAGC	3 cut(s)	181, 325, 581
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	156, 261
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	6 cut(s)	96, 126, 242, 392, 399, 573
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	4 cut(s)	8, 145, 318, 585
MnlI	CCTC	8 cut(s)	43, 90, 142, 181, 184, 442, 445, 491
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	3 cut(s)	90, 116, 257
MspI	CCGG	2 cut(s)	198, 547
MunI	CAATTG	1 cut(s)	585
MvnI	CGCG	2 cut(s)	286, 344
MwoI	GCNNNNNNNGC	2 cut(s)	352, 361
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	27, 282
PciSI	GCTCTTC	2 cut(s)	109, 225
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	4 cut(s)	196, 340, 343, 571
Psp124BI	GAGCTC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	27, 282
PstI	CTGCAG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	104
SapI	GCTCTTC	2 cut(s)	109, 225
SaqAI	TTAA	3 cut(s)	90, 116, 257
SatI	GCNGC	4 cut(s)	195, 339, 342, 570
Sau3AI	GATC	1 cut(s)	496
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	251
SgrAI	CRCCGGYG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	4 cut(s)	8, 145, 318, 585
SsiI	CCGC	4 cut(s)	138, 284, 342, 532
SspMI	CTAG	2 cut(s)	156, 261
SstI	GAGCTC	1 cut(s)	104
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	2 cut(s)	483, 495
TasI	AATT	4 cut(s)	8, 145, 318, 585
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	3 cut(s)	90, 116, 257
Tru9I	TTAA	3 cut(s)	90, 116, 257
TscAI	CASTG	1 cut(s)	314
TseI	GCWGC	3 cut(s)	194, 338, 569
TspDTI	ATGAA	2 cut(s)	452, 551
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	2 cut(s)	156, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.