Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008384

Physical Location & Seq

Genomic Coordinates Reverse (-)

14551321 .. 14553982

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G123000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCCATGTTCAAGTTCTGGGGATCTCAGGAGGAACAAACTCAGCCGCGGCCGGAGGTTGTTACTCCTTCACAGTCATGGTACCCTCCATCTGTAGTTAACTCTCCAACCTCTTCTCGCCCTGGAACTCCAAGCAGCACTTCTTCTAGCAGTTTGAGCTACCAAAGGCTTACAGAAAAGGCACCGTCTCCATCACATGTTTCGCCCGCCGAAGCTGCCGGTGTTATTGCTGTTTTGAAGGACAAAAGTGTTGATGAGCTACGGAAGCTTTTGGCTGACAAGGATGCATACCAGCAGTTTTTCCTTTCCCTCGATCAGGTCAAAATTCAAAATAATCTACGAGAGGAGCTACGGAGGGAAACGCTGCAATTATCCAGGGAAAACTTGGAAAAAGAACCACGCATGGTGGAACTTAGGAACCAGTGCAGAATAATTAGAACAACCGAGTTGGCCGCTGCTCAGGAGAGGCTAAATGAGCTTGAGAGGCAGAAAGAAGAAACTTTGAAGCAATATTCCCCTTCTTCTCTTCTCCATAGGCTTCAAGAATCGATGAATAAGACAGAGGAAGAATCCGAAAACCTGCACCAGCAGCTCATTGATAGGGAGGTTGATCTTGGGGGTTTTGTGGAGAAGTACAAGAAGCTTCGTACGACTTACCACAGGCGAGCACTTGTTCATCTTGCCGCAAAAACTTCTTCGATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Mod_r

Protein Analysis

236

Amino Acids

26.97

Weight (kDa)

7.84

Isoelectric Point (pI)

66.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36680 AT2G36680 AT2G36680 AT2G36680 AT3G53120
fragaria_vesca	FvH4_6g17210
malus_domestica	MD12G1102900.v1.1 MD14G1097000.v1.1
prunus_persica	Prupe.7G123000_v2.0.a1
pyrus_communis	pycom12g10100 pycom14g09480
rosa_chinensis	RchiOBHm_Chr3g0471291
rosa_laevigata	RLG00000024190
rosa_multiflora	Rmu_sc0009082.1_g000004 Rmu_sc0015755.1_g000001 Rmu_sc0020748.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410100
rosa_rugosa	Rorug03G0116800
rosa_samantha	Rh3AG166300 Rh3BG191700 Rh3CG182000 Rh3DG184000
rosa_wichuraiana	Rw3G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	588
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	2 cut(s)	81, 181
AccII	CGCG	1 cut(s)	49
AciI	CCGC	5 cut(s)	47, 49, 207, 453, 684
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	2 cut(s)	50, 450
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	3 cut(s)	83, 635, 649
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	5 cut(s)	13, 238, 329, 505, 542
AjnI	CCWGG	2 cut(s)	121, 374
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	8 cut(s)	159, 215, 259, 268, 349, 478, 592, 643
AluI	AGCT	8 cut(s)	159, 215, 259, 268, 349, 478, 592, 643
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	2 cut(s)	50, 450
ApeKI	GCWGC	5 cut(s)	135, 215, 364, 455, 589
ApoI	RAATTY	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	81
BanI	GGYRCC	2 cut(s)	81, 181
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	5 cut(s)	147, 202, 351, 442, 601
BccI	CCATC	2 cut(s)	97, 199
BciT130I	CCWGG	2 cut(s)	123, 376
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	588
BisI	GCNGC	9 cut(s)	47, 50, 136, 216, 365, 453, 456, 590, 684
BlsI	GCNGC	9 cut(s)	48, 51, 137, 217, 366, 454, 457, 591, 685
Bme1390I	CCNGG	2 cut(s)	123, 376
BmiI	GGNNCC	3 cut(s)	83, 183, 419
BmrFI	CCNGG	2 cut(s)	123, 376
BmsI	GCATC	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	47, 121, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	421
BseBI	CCWGG	2 cut(s)	123, 376
BseCI	ATCGAT	1 cut(s)	548
BseDI	CCNNGG	3 cut(s)	47, 121, 375
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	3 cut(s)	41, 56, 473
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	359
BseX3I	CGGCCG	1 cut(s)	50
BseXI	GCAGC	5 cut(s)	147, 202, 351, 442, 601
BsgI	GTGCAG	2 cut(s)	445, 566
Bsh1236I	CGCG	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	52, 452
BshNI	GGYRCC	2 cut(s)	81, 181
BshVI	ATCGAT	1 cut(s)	548
BsiEI	CGRYCG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	53, 219
BsiWI	CGTACG	1 cut(s)	647
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	192
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	52, 452
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	3 cut(s)	23, 313, 610
BspACI	CCGC	5 cut(s)	47, 49, 207, 453, 684
BspANI	GGCC	2 cut(s)	52, 452
BspCNI	CTCAG	3 cut(s)	40, 55, 472
BspDI	ATCGAT	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	83, 183, 419
BspMI	ACCTGC	1 cut(s)	588
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	2 cut(s)	81, 181
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	47, 121, 375
BssMI	GATC	3 cut(s)	23, 313, 610
Bst2UI	CCWGG	2 cut(s)	123, 376
Bst4CI	ACNGT	2 cut(s)	75, 186
Bst6I	CTCTTC	2 cut(s)	118, 531
BstC8I	GCNNGC	2 cut(s)	207, 666
BstDEI	CTNAG	4 cut(s)	27, 42, 413, 459
BstDSI	CCRYGG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	49
BstKTI	GATC	3 cut(s)	26, 316, 613
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	23, 313, 610
BstMCI	CGRYCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 215, 265, 475, 484, 589
BstNI	CCWGG	2 cut(s)	123, 376
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	121, 374
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	5 cut(s)	147, 202, 351, 442, 601
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BstZI	CGGCCG	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	52, 452
BsuTUI	ATCGAT	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	428
BveI	ACCTGC	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	207, 666
Cfr10I	RCCGGY	1 cut(s)	218
Cfr42I	CCGCGG	1 cut(s)	50
ClaI	ATCGAT	1 cut(s)	548
Csp6I	GTAC	3 cut(s)	82, 634, 648
CviAII	CATG	4 cut(s)	7, 78, 197, 403
CviQI	GTAC	3 cut(s)	82, 634, 648
DdeI	CTNAG	4 cut(s)	27, 42, 413, 459
DpnI	GATC	3 cut(s)	25, 315, 612
DpnII	GATC	3 cut(s)	23, 313, 610
EaeI	YGGCCR	2 cut(s)	50, 450
EagI	CGGCCG	1 cut(s)	50
Eam1104I	CTCTTC	2 cut(s)	118, 531
EarI	CTCTTC	2 cut(s)	118, 531
EclXI	CGGCCG	1 cut(s)	50
Eco52I	CGGCCG	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	121, 374
EcoT22I	ATGCAT	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	4 cut(s)	10, 81, 200, 406
FaiI	YATR	6 cut(s)	8, 79, 198, 289, 404, 534
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FatI	CATG	4 cut(s)	6, 77, 196, 402
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	9 cut(s)	47, 50, 136, 216, 365, 453, 456, 590, 684
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	9 cut(s)	47, 50, 136, 216, 365, 453, 456, 590, 684
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	9 cut(s)	47, 50, 136, 216, 365, 453, 456, 590, 684
HaeIII	GGCC	2 cut(s)	52, 452
HapII	CCGG	2 cut(s)	53, 219
Hin1II	CATG	4 cut(s)	10, 81, 200, 406
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	2 cut(s)	266, 641
HinfI	GANTC	2 cut(s)	545, 569
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	53, 219
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	3 cut(s)	29, 461, 542
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	78, 232, 528
HpyCH4III	ACNGT	2 cut(s)	75, 186
HpyCH4V	TGCA	4 cut(s)	287, 367, 426, 583
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 215, 265, 475, 484, 589
HpyF3I	CTNAG	4 cut(s)	27, 42, 413, 459
Hsp92II	CATG	4 cut(s)	10, 81, 200, 406
KpnI	GGTACC	1 cut(s)	85
KspAI	GTTAAC	1 cut(s)	100
KspI	CCGCGG	1 cut(s)	50
Kzo9I	GATC	3 cut(s)	23, 313, 610
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	5 cut(s)	147, 202, 351, 442, 601
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	25, 315, 612
MboI	GATC	3 cut(s)	23, 313, 610
MboII	GAAGA	7 cut(s)	105, 135, 506, 513, 518, 578, 687
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	3 cut(s)	324, 368, 432
MmeI	TCCRAC	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	76
MspA1I	CMGCKG	2 cut(s)	49, 455
MspI	CCGG	2 cut(s)	53, 219
MspR9I	CCNGG	2 cut(s)	123, 376
MvaI	CCWGG	2 cut(s)	123, 376
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	6 cut(s)	156, 215, 265, 475, 484, 589
NdeII	GATC	3 cut(s)	23, 313, 610
NlaIII	CATG	4 cut(s)	10, 81, 200, 406
NlaIV	GGNNCC	3 cut(s)	83, 183, 419
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	200
PciI	ACATGT	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	545, 569
Pfl23II	CGTACG	1 cut(s)	647
PkrI	GCNGC	9 cut(s)	48, 51, 137, 217, 366, 454, 457, 591, 685
PscI	ACATGT	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	121, 374
PspGI	CCWGG	2 cut(s)	121, 374
PspLI	CGTACG	1 cut(s)	647
PspN4I	GGNNCC	3 cut(s)	83, 183, 419
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	3 cut(s)	83, 635, 649
RsaNI	GTAC	3 cut(s)	82, 634, 648
RseI	CAYNNNNRTG	1 cut(s)	76
SacII	CCGCGG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	9 cut(s)	47, 50, 136, 216, 365, 453, 456, 590, 684
Sau3AI	GATC	3 cut(s)	23, 313, 610
ScrFI	CCNGG	2 cut(s)	123, 376
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	93
Sfr303I	CCGCGG	1 cut(s)	50
SgrBI	CCGCGG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	324, 368, 432
SsiI	CCGC	5 cut(s)	47, 49, 207, 453, 684
SspI	AATATT	1 cut(s)	512
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	121, 374
TaaI	ACNGT	2 cut(s)	75, 186
TaqI	TCGA	3 cut(s)	312, 548, 698
TasI	AATT	3 cut(s)	324, 368, 432
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	4 cut(s)	49, 52, 455, 686
TfiI	GAWTC	2 cut(s)	545, 569
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	428
TseI	GCWGC	5 cut(s)	135, 215, 364, 455, 589
TspDTI	ATGAA	2 cut(s)	566, 665
TspGWI	ACGGA	2 cut(s)	277, 367
TspRI	CASTG	1 cut(s)	428
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.