Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008384

Physical Location & Seq

Genomic Coordinates Forward (+)

11186668 .. 11190322

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTCAAATTCTGGGGATCACAGGAGCAGCAAGCTCAGCCACGTCCGGATGATGCTGCTCCGTCGCAGCAGTCTTGGTATCCTCCCTCTGTTAGTTCATCGTCTCGGCCTTTAACACCGAGTAGAACCTCTTCTACTCCCAATTTGAGTTCCAGGGGTAGCTCGCCTGTTTCTCCAACTGAAGCTGCCGGTGTTATTGCTTCTTTGAAGGACAAAAGTGTTGACGAACTACGGAAGCTTTTGTCTGACAAGGATGCATACCATCAATTTTTCCTGTCGCTCGAGCAGGTCAAAGATCAAAATAATCTAAGGGGAGAGCTACGAAAGGAAACTCTGCAATTAGCCAGGGAAAACATGGAGAAGGAACCACGCATGGTGGAACTTAGAAATCAGTGCAGAATAATTAGAACAACAGAGCTGGCTGCCGCTCAAGAGAGGCTAAATGAGCTTGAGCGACAGAAAGAAGAAACTTTGAAGTCACGTTCACCTTCTTCCCTTCTCCAAAGGCTTCAAGAAGCAATGAATAAGACAGAGGAGGAATCTGAAGACCTGCACAGGCAACTCCTCAATAGTGAAATCGATCTGGGGACTTTTGTTCCAAAATATAAGAAGCTTCGCAACACTTACCACCGACGAGCGCTTGTTCATCTTGCGGCAAAAACATCTTCAATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Mod_r

Protein Analysis

226

Amino Acids

25.72

Weight (kDa)

9.16

Isoelectric Point (pI)

68.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mod_r	PF07200	70 - 214	8.9e-39	Modifier of rudimentary (Mod(r)) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36680 AT2G36680 AT2G36680 AT2G36680 AT3G53120
fragaria_vesca	FvH4_6g17210
malus_domestica	MD12G1102900.v1.1 MD14G1097000.v1.1
prunus_persica	Prupe.7G123000_v2.0.a1
pyrus_communis	pycom12g10100 pycom14g09480
rosa_chinensis	RchiOBHm_Chr3g0471291
rosa_laevigata	RLG00000024190
rosa_multiflora	Rmu_sc0009082.1_g000004 Rmu_sc0015755.1_g000001 Rmu_sc0020748.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410100
rosa_rugosa	Rorug03G0116800
rosa_samantha	Rh3AG166300 Rh3BG191700 Rh3CG182000 Rh3DG184000
rosa_wichuraiana	Rw3G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	277, 558
AccBSI	CCGCTC	1 cut(s)	428
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	2 cut(s)	426, 653
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	2 cut(s)	201, 564
AfeI	AGCGCT	1 cut(s)	639
AgsI	TTSAA	5 cut(s)	7, 208, 475, 512, 669
AjiI	CACGTC	1 cut(s)	44
AjnI	CCWGG	2 cut(s)	152, 344
AluBI	AGCT	9 cut(s)	35, 162, 185, 238, 319, 418, 448, 613, 675
AluI	AGCT	9 cut(s)	35, 162, 185, 238, 319, 418, 448, 613, 675
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	281
Aor13HI	TCCGGA	1 cut(s)	46
Aor51HI	AGCGCT	1 cut(s)	639
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	5 cut(s)	28, 56, 67, 185, 422
ApoI	RAATTY	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	640
AsuHPI	GGTGA	1 cut(s)	477
AvaI	CYCGRG	1 cut(s)	281
BarI	GAAGNNNNNNTAC	2 cut(s)	115, 147
BbsI	GAAGAC	1 cut(s)	552
BbvI	GCAGC	5 cut(s)	40, 43, 79, 172, 409
BccI	CCATC	1 cut(s)	270
BciT130I	CCWGG	2 cut(s)	154, 346
BciVI	GTATCC	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	641
BfuAI	ACCTGC	2 cut(s)	277, 558
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	7 cut(s)	29, 57, 68, 186, 423, 426, 654
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	7 cut(s)	30, 58, 69, 187, 424, 427, 655
Bme1390I	CCNGG	2 cut(s)	154, 346
BmeT110I	CYCGRG	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	2 cut(s)	154, 346
BmsI	GCATC	2 cut(s)	43, 244
BpiI	GAAGAC	1 cut(s)	552
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	414, 470
Bsa29I	ATCGAT	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	153, 345
BsaWI	WCCGGW	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	525
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	2 cut(s)	154, 346
BseCI	ATCGAT	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	153, 345
BseGI	GGATG	2 cut(s)	55, 259
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	548, 554
BseXI	GCAGC	5 cut(s)	40, 43, 79, 172, 409
BsgI	GTGCAG	2 cut(s)	415, 536
BshFI	GGCC	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	579
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	47, 189
BslFI	GGGAC	1 cut(s)	601
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	281
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	17, 295, 580
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	426, 653
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	579
BspEI	TCCGGA	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	366
BspMI	ACCTGC	2 cut(s)	277, 558
BspPI	GGATC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	153, 345
BssMI	GATC	3 cut(s)	17, 295, 580
Bst2UI	CCWGG	2 cut(s)	154, 346
Bst6I	CTCTTC	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	33, 164, 420
BstDEI	CTNAG	3 cut(s)	36, 308, 383
BstF5I	GGATG	2 cut(s)	55, 259
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	3 cut(s)	20, 298, 583
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	17, 295, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 445
BstNI	CCWGG	2 cut(s)	154, 346
BstSCI	CCNGG	2 cut(s)	152, 344
BstV1I	GCAGC	5 cut(s)	40, 43, 79, 172, 409
BstV2I	GAAGAC	1 cut(s)	552
Bsu15I	ATCGAT	1 cut(s)	579
BsuI	GTATCC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	109
BsuTUI	ATCGAT	1 cut(s)	579
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	55, 259
BtsIMutI	CAGTG	1 cut(s)	398
BveI	ACCTGC	2 cut(s)	277, 558
Cac8I	GCNNGC	3 cut(s)	33, 164, 420
CfoI	GCGC	1 cut(s)	640
Cfr10I	RCCGGY	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	579
CviAII	CATG	2 cut(s)	355, 373
DdeI	CTNAG	3 cut(s)	36, 308, 383
DpnI	GATC	3 cut(s)	19, 297, 582
DpnII	GATC	3 cut(s)	17, 295, 580
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	639
Eco57I	CTGAAG	2 cut(s)	201, 564
Eco88I	CYCGRG	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	152, 344
EcoT22I	ATGCAT	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	2 cut(s)	358, 376
FaiI	YATR	4 cut(s)	259, 356, 374, 606
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	2 cut(s)	354, 372
Fnu4HI	GCNGC	7 cut(s)	29, 57, 68, 186, 423, 426, 654
FokI	GGATG	2 cut(s)	62, 266
Fsp4HI	GCNGC	7 cut(s)	29, 57, 68, 186, 423, 426, 654
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	7 cut(s)	29, 57, 68, 186, 423, 426, 654
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	2 cut(s)	47, 189
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	2 cut(s)	358, 376
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	2 cut(s)	236, 611
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	2 cut(s)	47, 189
HphI	GGTGA	1 cut(s)	477
Hpy166II	GTNNAC	2 cut(s)	223, 485
Hpy188I	TCNGA	2 cut(s)	247, 544
Hpy188III	TCNNGA	3 cut(s)	47, 431, 512
Hpy8I	GTNNAC	2 cut(s)	223, 485
Hpy99I	CGWCG	2 cut(s)	67, 636
HpyAV	CCTTC	4 cut(s)	202, 355, 498, 506
HpyCH4IV	ACGT	2 cut(s)	43, 481
HpyCH4V	TGCA	4 cut(s)	257, 337, 396, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 445
HpyF3I	CTNAG	3 cut(s)	36, 308, 383
HpySE526I	ACGT	2 cut(s)	43, 481
Hsp92II	CATG	2 cut(s)	358, 376
HspAI	GCGC	1 cut(s)	638
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	17, 295, 580
LmnI	GCTCC	2 cut(s)	25, 64
Lsp1109I	GCAGC	5 cut(s)	40, 43, 79, 172, 409
LweI	GCATC	2 cut(s)	43, 244
MaeII	ACGT	2 cut(s)	43, 481
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	3 cut(s)	19, 297, 582
MbiI	CCGCTC	1 cut(s)	428
MboI	GATC	3 cut(s)	17, 295, 580
MboII	GAAGA	5 cut(s)	123, 476, 483, 557, 657
MluCI	AATT	5 cut(s)	8, 142, 266, 338, 402
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	93, 97, 139, 429, 526, 529, 575
Mph1103I	ATGCAT	1 cut(s)	259
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	675
MspI	CCGG	2 cut(s)	47, 189
MspR9I	CCNGG	2 cut(s)	154, 346
MvaI	CCWGG	2 cut(s)	154, 346
MwoI	GCNNNNNNNGC	2 cut(s)	37, 445
NdeII	GATC	3 cut(s)	17, 295, 580
NlaIII	CATG	2 cut(s)	358, 376
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	7 cut(s)	30, 58, 69, 187, 424, 427, 655
Psp6I	CCWGG	2 cut(s)	152, 344
PspGI	CCWGG	2 cut(s)	152, 344
PspN4I	GGNNCC	1 cut(s)	366
PspXI	VCTCGAGB	1 cut(s)	281
PsrI	GAACNNNNNNTAC	2 cut(s)	118, 150
PvuII	CAGCTG	1 cut(s)	675
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	7 cut(s)	29, 57, 68, 186, 423, 426, 654
Sau3AI	GATC	3 cut(s)	17, 295, 580
ScrFI	CCNGG	2 cut(s)	154, 346
SfaNI	GCATC	2 cut(s)	43, 244
Sfr274I	CTCGAG	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	281
SmlI	CTYRAG	3 cut(s)	281, 429, 449
SmoI	CTYRAG	3 cut(s)	281, 429, 449
Sse9I	AATT	5 cut(s)	8, 142, 266, 338, 402
SsiI	CCGC	2 cut(s)	426, 653
StyD4I	CCNGG	2 cut(s)	152, 344
TaiI	ACGT	2 cut(s)	46, 484
TaqI	TCGA	2 cut(s)	282, 579
TasI	AATT	5 cut(s)	8, 142, 266, 338, 402
TauI	GCSGC	2 cut(s)	428, 656
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	5 cut(s)	28, 56, 67, 185, 422
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	3 cut(s)	87, 536, 635
TspGWI	ACGGA	2 cut(s)	51, 247
TspRI	CASTG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XhoI	CTCGAG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.