Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008384

Physical Location & Seq

Genomic Coordinates Reverse (-)

32900215 .. 32904210

Gene Structure 3996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024190

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTCAAATTCTGGGGATCACAGGAGCCACAAGCTCAGCCACTTCCTGAGGATGCTCCAGCACAGCAGTCGTATTATCCTCACTCTGTTAACTCCCCGAGCTCTTCTCGTCCTTTAACTCCGAGTAGAACCTCTTCTGCTTCCAATTTGAGTTCTAGGGGTAACTCCCCCTCACCTGTTTCTCCTACCGAAGCTGCCGGTGTTATTGCTTCTTTGAAGGACAAAAGTGTTGATGAACTACGAAAGCTTTTGTCTGACAAGGATGCATACCATCAATTTTTCCTGTCGCTCGATCAGGTCAAGGTTCAAAATAATTTAAGGGAAGAGCTACGAAAGGAAACTCTGCAGTTAACTAGGGAAAACTTGGAAAAGGAACCGCGCATGGTGGAACTTAGAAACCAGTGCAGAATAATTAGAACAACAGAGTTGGCTGCCGCCCAAGAGAGGCTAAATGAGCTTGAGCGACAGAAAGAAGAAACTTTGAAGTTATGTTCACCTTCTTCCCTTCTCCAAAGGCTTCAAGAAGCAATGAATAAGACGGAGGAGGAATCTGAAGACCTGCACAGGCAACTCCTTAATAGTGAAATCGATCTCGGGACTTTTGTTCCGAAATATAAGAAGCTCCGCAACACTTACCACCGGCGAGCGCTTGTTCATCTTGCAGCAAAAACATCTTCAATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Mod_r

Protein Analysis

229

Amino Acids

25.97

Weight (kDa)

8.48

Isoelectric Point (pI)

68.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mod_r	PF07200	73 - 217	7.4e-39	Modifier of rudimentary (Mod(r)) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36680 AT2G36680 AT2G36680 AT2G36680 AT3G53120
fragaria_vesca	FvH4_6g17210
malus_domestica	MD12G1102900.v1.1 MD14G1097000.v1.1
prunus_persica	Prupe.7G123000_v2.0.a1
pyrus_communis	pycom12g10100 pycom14g09480
rosa_chinensis	RchiOBHm_Chr3g0471291
rosa_laevigata	RLG00000024190
rosa_multiflora	Rmu_sc0009082.1_g000004 Rmu_sc0015755.1_g000001 Rmu_sc0020748.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410100
rosa_rugosa	Rorug03G0116800
rosa_samantha	Rh3AG166300 Rh3BG191700 Rh3CG182000 Rh3DG184000
rosa_wichuraiana	Rw3G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	567
AccII	CGCG	1 cut(s)	379
AciI	CCGC	3 cut(s)	377, 435, 625
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	573
AfeI	AGCGCT	1 cut(s)	648
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	6 cut(s)	7, 217, 308, 484, 521, 678
AluBI	AGCT	7 cut(s)	35, 102, 194, 247, 328, 457, 622
AluI	AGCT	7 cut(s)	35, 102, 194, 247, 328, 457, 622
Alw21I	GWGCWC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	2 cut(s)	97, 593
Aor51HI	AGCGCT	1 cut(s)	648
ApeKI	GCWGC	3 cut(s)	194, 431, 662
ApoI	RAATTY	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	133
AspLEI	GCGC	2 cut(s)	381, 649
AsuHPI	GGTGA	2 cut(s)	165, 486
AvaI	CYCGRG	2 cut(s)	97, 593
AxyI	CCTNAGG	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	181, 418, 674
BccI	CCATC	1 cut(s)	279
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BfaI	CTAG	2 cut(s)	156, 354
BfmI	CTRYAG	1 cut(s)	344
BfoI	RGCGCY	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	567
BisI	GCNGC	4 cut(s)	195, 432, 435, 663
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	4 cut(s)	196, 433, 436, 664
BmeT110I	CYCGRG	2 cut(s)	97, 593
BmiI	GGNNCC	2 cut(s)	27, 375
BmsI	GCATC	2 cut(s)	43, 253
BpiI	GAAGAC	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpmI	CTGGAG	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	588
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse118I	RCCGGY	2 cut(s)	197, 639
Bse1I	ACTGG	1 cut(s)	400
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	534
BseCI	ATCGAT	1 cut(s)	588
BseGI	GGATG	2 cut(s)	58, 268
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	39, 50
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	3 cut(s)	181, 418, 674
BsgI	GTGCAG	2 cut(s)	424, 545
Bsh1236I	CGCG	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	2 cut(s)	97, 593
BsiSI	CCGG	2 cut(s)	198, 640
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	610
BsoBI	CYCGRG	2 cut(s)	97, 593
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	17, 292, 589
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	3 cut(s)	377, 435, 625
BspCNI	CTCAG	2 cut(s)	40, 49
BspDI	ATCGAT	1 cut(s)	588
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	27, 375
BspMAI	CTGCAG	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	25
BspQI	GCTCTTC	2 cut(s)	109, 318
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	2 cut(s)	197, 639
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	2 cut(s)	197, 639
BssMI	GATC	3 cut(s)	17, 292, 589
Bst6I	CTCTTC	3 cut(s)	109, 139, 318
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	3 cut(s)	36, 48, 392
BstF5I	GGATG	2 cut(s)	58, 268
BstFNI	CGCG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	2 cut(s)	381, 649
BstKTI	GATC	3 cut(s)	20, 295, 592
BstMBI	GATC	3 cut(s)	17, 292, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	344
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	3 cut(s)	181, 418, 674
BstV2I	GAAGAC	1 cut(s)	561
Bsu15I	ATCGAT	1 cut(s)	588
Bsu36I	CCTNAGG	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	58, 268
BtsIMutI	CAGTG	1 cut(s)	407
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	645
CfoI	GCGC	2 cut(s)	381, 649
Cfr10I	RCCGGY	2 cut(s)	197, 639
ClaI	ATCGAT	1 cut(s)	588
CviAII	CATG	1 cut(s)	382
DdeI	CTNAG	3 cut(s)	36, 48, 392
DpnI	GATC	3 cut(s)	19, 294, 591
DpnII	GATC	3 cut(s)	17, 292, 589
Eam1104I	CTCTTC	3 cut(s)	109, 139, 318
EarI	CTCTTC	3 cut(s)	109, 139, 318
Ecl136II	GAGCTC	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	104
Eco47III	AGCGCT	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	48
Eco88I	CYCGRG	2 cut(s)	97, 593
EcoICRI	GAGCTC	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	1 cut(s)	385
FaiI	YATR	4 cut(s)	268, 383, 490, 615
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	1 cut(s)	381
Fnu4HI	GCNGC	4 cut(s)	195, 432, 435, 663
FokI	GGATG	2 cut(s)	65, 275
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	195, 432, 435, 663
FspBI	CTAG	2 cut(s)	156, 354
GlaI	GCGC	2 cut(s)	380, 648
GluI	GCNGC	4 cut(s)	195, 432, 435, 663
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	650
HapII	CCGG	2 cut(s)	198, 640
HhaI	GCGC	2 cut(s)	381, 649
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	2 cut(s)	379, 647
HinP1I	GCGC	2 cut(s)	379, 647
HincII	GTYRAC	2 cut(s)	91, 351
HindII	GTYRAC	2 cut(s)	91, 351
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	1 cut(s)	548
HpaI	GTTAAC	2 cut(s)	91, 351
HpaII	CCGG	2 cut(s)	198, 640
HphI	GGTGA	2 cut(s)	165, 486
Hpy166II	GTNNAC	3 cut(s)	91, 351, 494
Hpy188I	TCNGA	4 cut(s)	123, 256, 553, 609
Hpy188III	TCNNGA	3 cut(s)	47, 521, 595
Hpy8I	GTNNAC	3 cut(s)	91, 351, 494
HpyAV	CCTTC	3 cut(s)	211, 507, 515
HpyCH4V	TGCA	5 cut(s)	266, 346, 405, 562, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	3 cut(s)	36, 48, 392
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	2 cut(s)	379, 647
KspAI	GTTAAC	2 cut(s)	91, 351
Kzo9I	GATC	3 cut(s)	17, 292, 589
LguI	GCTCTTC	2 cut(s)	109, 318
LmnI	GCTCC	3 cut(s)	25, 61, 627
Lsp1109I	GCAGC	3 cut(s)	181, 418, 674
LweI	GCATC	2 cut(s)	43, 253
MaeI	CTAG	2 cut(s)	156, 354
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	3 cut(s)	19, 294, 591
MboI	GATC	3 cut(s)	17, 292, 589
MboII	GAAGA	7 cut(s)	96, 126, 335, 485, 492, 566, 666
MfeI	CAATTG	1 cut(s)	678
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	6 cut(s)	8, 145, 275, 313, 411, 678
MnlI	CCTC	7 cut(s)	43, 90, 142, 181, 438, 535, 538
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	5 cut(s)	90, 116, 317, 350, 576
MspI	CCGG	2 cut(s)	198, 640
MunI	CAATTG	1 cut(s)	678
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	454
NdeII	GATC	3 cut(s)	17, 292, 589
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	27, 375
NsiI	ATGCAT	1 cut(s)	268
PciSI	GCTCTTC	2 cut(s)	109, 318
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	4 cut(s)	196, 433, 436, 664
Psp124BI	GAGCTC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	27, 375
PstI	CTGCAG	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	104
SapI	GCTCTTC	2 cut(s)	109, 318
SaqAI	TTAA	5 cut(s)	90, 116, 317, 350, 576
SatI	GCNGC	4 cut(s)	195, 432, 435, 663
Sau3AI	GATC	3 cut(s)	17, 292, 589
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	43, 253
SfcI	CTRYAG	1 cut(s)	344
SgrAI	CRCCGGYG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	6 cut(s)	8, 145, 275, 313, 411, 678
SsiI	CCGC	3 cut(s)	377, 435, 625
SspMI	CTAG	2 cut(s)	156, 354
SstI	GAGCTC	1 cut(s)	104
TaqI	TCGA	2 cut(s)	291, 588
TasI	AATT	6 cut(s)	8, 145, 275, 313, 411, 678
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	5 cut(s)	90, 116, 317, 350, 576
Tru9I	TTAA	5 cut(s)	90, 116, 317, 350, 576
TscAI	CASTG	1 cut(s)	407
TseI	GCWGC	3 cut(s)	194, 431, 662
TspDTI	ATGAA	3 cut(s)	249, 545, 644
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	2 cut(s)	156, 354
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.