Rh3AG166300

Vacuolar protein-sorting-associated protein 37 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008384
Physical Location & Seq
Forward (+)
15407456 .. 15411311
3856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG166300.1

Sequence Viewer

Length: 687 bp
ATGTTCAAATTCTGGGGATCACAGGAGCCACAAGCTCAGCCACGTCCTGAGGACGCTTCAGCACAGCAGTCCTATTATCCTCACTCTGTTAACTCCCCGAGCTCTTCTCGTCCTTTAACTCCGAGTAGAACCTCTTCCGCTTCCAATTTGAGTTCTAGGGGTAACTCCCCCTCACCTGTTTCTCCCACCGAAGCTGCCGGTGTTATTGCTTCTTTGAAGGACAAAAGTGTTGATGAACTACGAAAGCTTTTGTCTGACAAGGATGCATACCATCAATTTTTCCTGTCGCTCGATCAGGTCAAGGTTCAAAATAATTTAAGGGAAGAGCTACGAAAGGAAACTCTGCAGTTAACTAGGGAAAACTTGGAAAAGGAACCGCGCATGGTGGAACTTAGAAACCAGTGCAGAATAATTAGAACGACAGAGTTGGCTGCCGCGCAAGAGAGGCTAAATGAGCTTGAGCGACAGAAAGAAGAAACTTTGAAGTTATGTTCACCTTCTTCCCTTCTCCAAAGGCTTCAAGAAGCAATGAATAAGACGGAGGAGGAATCTGAAAACCTGCACAGGCAACTCCTCGATAGTGAAATCGATCTTGGGACTTTTGTTCCGAAATATAAGAAGCTCCGCAACACTTACCACCGGCGAGCGCTTGTTCATCTTGCAGCAAAAACATCTTCAATTGGCTGA

Protein Analysis

228

Amino Acids

26.0

Weight (kDa)

8.81

Isoelectric Point (pI)

66.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mod_r PF07200 73 - 217 3e-39 Modifier of rudimentary (Mod(r)) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 567
AccII CGCG 2 cut(s) 379, 437
AciI CCGC 4 cut(s) 138, 377, 435, 625
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 42
AfeI AGCGCT 1 cut(s) 648
AgsI TTSAA 6 cut(s) 7, 217, 308, 484, 521, 678
AjiI CACGTC 1 cut(s) 44
AjuI GAANNNNNNNTTGG 2 cut(s) 576, 608
AluBI AGCT 7 cut(s) 35, 102, 194, 247, 328, 457, 622
AluI AGCT 7 cut(s) 35, 102, 194, 247, 328, 457, 622
Alw21I GWGCWC 1 cut(s) 104
AlwI GGATC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 97
Aor51HI AGCGCT 1 cut(s) 648
ApeKI GCWGC 3 cut(s) 194, 431, 662
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 133
AspLEI GCGC 3 cut(s) 381, 439, 649
AsuHPI GGTGA 2 cut(s) 165, 486
AvaI CYCGRG 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 48
BanII GRGCYC 1 cut(s) 104
BarI GAAGNNNNNNTAC 2 cut(s) 118, 150
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 181, 418, 674
BccI CCATC 1 cut(s) 279
BfaI CTAG 2 cut(s) 156, 354
BfmI CTRYAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 650
BfuAI ACCTGC 1 cut(s) 567
BisI GCNGC 4 cut(s) 195, 432, 435, 663
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 4 cut(s) 196, 433, 436, 664
BmeT110I CYCGRG 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 27, 375
BmsI GCATC 1 cut(s) 253
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 479
Bsa29I ATCGAT 1 cut(s) 588
Bse118I RCCGGY 2 cut(s) 197, 639
Bse1I ACTGG 1 cut(s) 400
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 534
BseCI ATCGAT 1 cut(s) 588
BseGI GGATG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 2 cut(s) 39, 50
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 2 cut(s) 557, 563
BseXI GCAGC 3 cut(s) 181, 418, 674
BsgI GTGCAG 2 cut(s) 424, 545
Bsh1236I CGCG 2 cut(s) 379, 437
BshVI ATCGAT 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 198, 640
BslFI GGGAC 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 610
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 3 cut(s) 17, 292, 589
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 4 cut(s) 138, 377, 435, 625
BspCNI CTCAG 2 cut(s) 40, 49
BspDI ATCGAT 1 cut(s) 588
BspFNI CGCG 2 cut(s) 379, 437
BspLI GGNNCC 2 cut(s) 27, 375
BspMAI CTGCAG 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 567
BspPI GGATC 1 cut(s) 25
BspQI GCTCTTC 2 cut(s) 109, 318
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 2 cut(s) 197, 639
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 2 cut(s) 197, 639
BssMI GATC 3 cut(s) 17, 292, 589
Bst6I CTCTTC 3 cut(s) 109, 139, 318
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 3 cut(s) 36, 48, 392
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 2 cut(s) 379, 437
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 3 cut(s) 381, 439, 649
BstKTI GATC 3 cut(s) 20, 295, 592
BstMBI GATC 3 cut(s) 17, 292, 589
BstMWI GCNNNNNNNGC 2 cut(s) 445, 454
BstSFI CTRYAG 1 cut(s) 344
BstUI CGCG 2 cut(s) 379, 437
BstV1I GCAGC 3 cut(s) 181, 418, 674
Bsu15I ATCGAT 1 cut(s) 588
Bsu36I CCTNAGG 1 cut(s) 48
BsuTUI ATCGAT 1 cut(s) 588
BtrI CACGTC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 407
BveI ACCTGC 1 cut(s) 567
Cac8I GCNNGC 1 cut(s) 645
CfoI GCGC 3 cut(s) 381, 439, 649
Cfr10I RCCGGY 2 cut(s) 197, 639
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 1 cut(s) 62
CviAII CATG 1 cut(s) 382
DdeI CTNAG 3 cut(s) 36, 48, 392
DpnI GATC 3 cut(s) 19, 294, 591
DpnII GATC 3 cut(s) 17, 292, 589
Eam1104I CTCTTC 3 cut(s) 109, 139, 318
EarI CTCTTC 3 cut(s) 109, 139, 318
Ecl136II GAGCTC 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 104
Eco47III AGCGCT 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 42
Eco81I CCTNAGG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 104
FaeI CATG 1 cut(s) 385
FaiI YATR 4 cut(s) 268, 383, 490, 615
FaqI GGGAC 1 cut(s) 610
FatI CATG 1 cut(s) 381
Fnu4HI GCNGC 4 cut(s) 195, 432, 435, 663
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 4 cut(s) 195, 432, 435, 663
FspBI CTAG 2 cut(s) 156, 354
GlaI GCGC 3 cut(s) 380, 438, 648
GluI GCNGC 4 cut(s) 195, 432, 435, 663
HaeII RGCGCY 1 cut(s) 650
HapII CCGG 2 cut(s) 198, 640
HgaI GACGC 1 cut(s) 62
HhaI GCGC 3 cut(s) 381, 439, 649
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 3 cut(s) 379, 437, 647
HinP1I GCGC 3 cut(s) 379, 437, 647
HincII GTYRAC 2 cut(s) 91, 351
HindII GTYRAC 2 cut(s) 91, 351
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 1 cut(s) 548
HpaI GTTAAC 2 cut(s) 91, 351
HpaII CCGG 2 cut(s) 198, 640
HphI GGTGA 2 cut(s) 165, 486
Hpy166II GTNNAC 3 cut(s) 91, 351, 494
Hpy188I TCNGA 4 cut(s) 123, 256, 553, 609
Hpy188III TCNNGA 2 cut(s) 47, 521
Hpy8I GTNNAC 3 cut(s) 91, 351, 494
HpyAV CCTTC 3 cut(s) 211, 507, 515
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 5 cut(s) 266, 346, 405, 562, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 454
HpyF3I CTNAG 3 cut(s) 36, 48, 392
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 3 cut(s) 379, 437, 647
KspAI GTTAAC 2 cut(s) 91, 351
Kzo9I GATC 3 cut(s) 17, 292, 589
LguI GCTCTTC 2 cut(s) 109, 318
LmnI GCTCC 2 cut(s) 25, 627
Lsp1109I GCAGC 3 cut(s) 181, 418, 674
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 156, 354
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 161
MalI GATC 3 cut(s) 19, 294, 591
MboI GATC 3 cut(s) 17, 292, 589
MboII GAAGA 6 cut(s) 96, 126, 335, 485, 492, 666
MfeI CAATTG 1 cut(s) 678
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 6 cut(s) 8, 145, 275, 313, 411, 678
MnlI CCTC 8 cut(s) 43, 90, 142, 181, 438, 535, 538, 584
Mph1103I ATGCAT 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 4 cut(s) 90, 116, 317, 350
MspI CCGG 2 cut(s) 198, 640
MunI CAATTG 1 cut(s) 678
MvnI CGCG 2 cut(s) 379, 437
MwoI GCNNNNNNNGC 2 cut(s) 445, 454
NdeII GATC 3 cut(s) 17, 292, 589
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 2 cut(s) 27, 375
NsiI ATGCAT 1 cut(s) 268
PciSI GCTCTTC 2 cut(s) 109, 318
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 4 cut(s) 196, 433, 436, 664
Psp124BI GAGCTC 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 27, 375
PstI CTGCAG 1 cut(s) 348
SacI GAGCTC 1 cut(s) 104
SapI GCTCTTC 2 cut(s) 109, 318
SaqAI TTAA 4 cut(s) 90, 116, 317, 350
SatI GCNGC 4 cut(s) 195, 432, 435, 663
Sau3AI GATC 3 cut(s) 17, 292, 589
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 344
SgrAI CRCCGGYG 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 6 cut(s) 8, 145, 275, 313, 411, 678
SsiI CCGC 4 cut(s) 138, 377, 435, 625
SspMI CTAG 2 cut(s) 156, 354
SstI GAGCTC 1 cut(s) 104
TaiI ACGT 1 cut(s) 46
TaqI TCGA 3 cut(s) 291, 576, 588
TasI AATT 6 cut(s) 8, 145, 275, 313, 411, 678
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 4 cut(s) 90, 116, 317, 350
Tru9I TTAA 4 cut(s) 90, 116, 317, 350
TscAI CASTG 1 cut(s) 407
TseI GCWGC 3 cut(s) 194, 431, 662
TspDTI ATGAA 3 cut(s) 249, 545, 644
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 1 cut(s) 407
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 133
XspI CTAG 2 cut(s) 156, 354
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.