Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015755.1

Orthogroup ID

OG0008384

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 6304

Gene Structure 6304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015755.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 938 bp

acgtaaccgttgatacccaaaccgggaaaacccagtctccacctctcggaactctttctcctcttcaactttcgccgtcgtcgtctctctattttctctgcggactctactcgcttccgattcggttcggctccattttgatcggacctctcccagccatgttcaaattctggggatcacaggagccacaagctcagccacgtcctgaggatgcttcaacactgcagtcctattatcctcactctgttaactccccgagctcttctcgtcctttaactccgagtagaacctcttccgcttccaatttgagttctaggggtaactccccctcacctgtttctcccaccgaagctgccggtgttattgcttctttgaaggacaaaagtgttgatgaactacgaaagcttttgtctgacaaggatgcataccatcaatttttcctgctctatgatgtacgacttctttatgggaaattggctgctgctgtgacgaaaaaaaaaggggtcagaggagccacttggacttttcttcacactcttgctgctcagtcttgcgacggcgaattgccaagggaagagctacgaaaggaaactctgcagttaactagggaaaacttggaaaaggaaccgcgcatggtggaacttagaaaccagtgcagaataattagaacgacagagttggctgccgcgcaagagaagctaaatgagcttgagcgacagaaagaagaaactttgaagttatgttcaccttcttcccttctccaaaggcttcaagaagcaatgaataagacggaggaggaatctgaaaacctgcacaggcaactcctcgatagtgaaatcgatcttgggacttttgttccgaaatataagaagctccgcaacacttaccaccggcgagcgcttgttcatcttgcagcaaaaacatcttcaattggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Mod_r

Protein Analysis

311

Amino Acids

34.71

Weight (kDa)

9.16

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36680 AT2G36680 AT2G36680 AT2G36680 AT3G53120
fragaria_vesca	FvH4_6g17210
malus_domestica	MD12G1102900.v1.1 MD14G1097000.v1.1
prunus_persica	Prupe.7G123000_v2.0.a1
pyrus_communis	pycom12g10100 pycom14g09480
rosa_chinensis	RchiOBHm_Chr3g0471291
rosa_laevigata	RLG00000024190
rosa_multiflora	Rmu_sc0009082.1_g000004 Rmu_sc0015755.1_g000001 Rmu_sc0020748.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410100
rosa_rugosa	Rorug03G0116800
rosa_samantha	Rh3AG166300 Rh3BG191700 Rh3CG182000 Rh3DG184000
rosa_wichuraiana	Rw3G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	818
AccII	CGCG	2 cut(s)	630, 688
AciI	CCGC	5 cut(s)	101, 296, 628, 686, 876
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	166
AfaI	GTAC	1 cut(s)	455
AfeI	AGCGCT	1 cut(s)	899
AfiI	CCNNNNNNNGG	2 cut(s)	23, 46
AgsI	TTSAA	7 cut(s)	67, 165, 218, 375, 735, 772, 929
AjiI	CACGTC	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	827, 859
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	8 cut(s)	193, 260, 352, 405, 579, 699, 708, 873
AluI	AGCT	8 cut(s)	193, 260, 352, 405, 579, 699, 708, 873
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	2 cut(s)	41, 89
AlwI	GGATC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	255
Aor51HI	AGCGCT	1 cut(s)	899
ApeKI	GCWGC	6 cut(s)	352, 478, 481, 541, 682, 913
ApoI	RAATTY	1 cut(s)	166
Asp700I	GAANNNNTTC	2 cut(s)	54, 291
AspLEI	GCGC	3 cut(s)	632, 690, 900
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	323, 737
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	6 cut(s)	339, 465, 468, 528, 669, 925
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	2 cut(s)	60, 573
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	41, 89
BfaI	CTAG	2 cut(s)	314, 605
BfmI	CTRYAG	2 cut(s)	223, 595
BfoI	RGCGCY	1 cut(s)	901
BfuAI	ACCTGC	1 cut(s)	818
BisI	GCNGC	7 cut(s)	353, 479, 482, 542, 683, 686, 914
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	7 cut(s)	354, 480, 483, 543, 684, 687, 915
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	255
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	4 cut(s)	132, 185, 513, 626
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	201, 411
BmuI	ACTGGG	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
Bpu1102I	GCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	730
BpuMI	CCSGG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	839
BsaJI	CCNNGG	1 cut(s)	568
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 42, 51, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 46
Bse118I	RCCGGY	2 cut(s)	355, 890
Bse1I	ACTGG	2 cut(s)	33, 651
Bse21I	CCTNAGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	785
BseCI	ATCGAT	1 cut(s)	839
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	2 cut(s)	216, 426
BseLI	CCNNNNNNNGG	2 cut(s)	23, 46
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	3 cut(s)	197, 208, 559
BseNI	ACTGG	2 cut(s)	33, 651
BseRI	GAGGAG	4 cut(s)	50, 524, 808, 814
BseXI	GCAGC	6 cut(s)	339, 465, 468, 528, 669, 925
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	2 cut(s)	675, 796
Bsh1236I	CGCG	2 cut(s)	630, 688
BshVI	ATCGAT	1 cut(s)	839
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	23, 356, 891
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	2 cut(s)	23, 46
BsmAI	GTCTC	2 cut(s)	41, 89
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	861
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	140, 175, 840
Bsp1720I	GCTNAGC	1 cut(s)	194
BspACI	CCGC	5 cut(s)	101, 296, 628, 686, 876
BspCNI	CTCAG	3 cut(s)	198, 207, 558
BspDI	ATCGAT	1 cut(s)	839
BspFNI	CGCG	2 cut(s)	630, 688
BspLI	GGNNCC	4 cut(s)	132, 185, 513, 626
BspMAI	CTGCAG	2 cut(s)	227, 599
BspMI	ACCTGC	1 cut(s)	818
BspPI	GGATC	1 cut(s)	183
BspQI	GCTCTTC	2 cut(s)	267, 569
BsrDI	GCAATG	1 cut(s)	785
BsrFI	RCCGGY	2 cut(s)	355, 890
BsrI	ACTGG	2 cut(s)	33, 651
BssAI	RCCGGY	2 cut(s)	355, 890
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	3 cut(s)	140, 175, 840
BssT1I	CCWWGG	1 cut(s)	568
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	4 cut(s)	68, 267, 297, 569
BstC8I	GCNNGC	1 cut(s)	896
BstDEI	CTNAG	4 cut(s)	194, 206, 545, 643
BstF5I	GGATG	2 cut(s)	216, 426
BstFNI	CGCG	2 cut(s)	630, 688
BstH2I	RGCGCY	1 cut(s)	901
BstHHI	GCGC	3 cut(s)	632, 690, 900
BstKTI	GATC	3 cut(s)	143, 178, 843
BstMAI	GTCTC	2 cut(s)	41, 89
BstMBI	GATC	3 cut(s)	140, 175, 840
BstMWI	GCNNNNNNNGC	2 cut(s)	696, 705
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	2 cut(s)	223, 595
BstUI	CGCG	2 cut(s)	630, 688
BstV1I	GCAGC	6 cut(s)	339, 465, 468, 528, 669, 925
Bsu15I	ATCGAT	1 cut(s)	839
Bsu36I	CCTNAGG	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	839
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	216, 426
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	220, 658
BveI	ACCTGC	1 cut(s)	818
Cac8I	GCNNGC	1 cut(s)	896
CfoI	GCGC	3 cut(s)	632, 690, 900
Cfr10I	RCCGGY	2 cut(s)	355, 890
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	839
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	2 cut(s)	159, 633
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	4 cut(s)	194, 206, 545, 643
DpnI	GATC	3 cut(s)	142, 177, 842
DpnII	GATC	3 cut(s)	140, 175, 840
Eam1104I	CTCTTC	4 cut(s)	68, 267, 297, 569
EarI	CTCTTC	4 cut(s)	68, 267, 297, 569
Ecl136II	GAGCTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	145
Eco47III	AGCGCT	1 cut(s)	899
Eco53kI	GAGCTC	1 cut(s)	260
Eco81I	CCTNAGG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	568
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	2 cut(s)	162, 636
FaiI	YATR	7 cut(s)	160, 426, 449, 467, 634, 741, 866
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	2 cut(s)	158, 632
Fnu4HI	GCNGC	7 cut(s)	353, 479, 482, 542, 683, 686, 914
FokI	GGATG	2 cut(s)	223, 433
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	7 cut(s)	353, 479, 482, 542, 683, 686, 914
FspBI	CTAG	2 cut(s)	314, 605
GlaI	GCGC	3 cut(s)	631, 689, 899
GluI	GCNGC	7 cut(s)	353, 479, 482, 542, 683, 686, 914
GsaI	CCCAGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	901
HapII	CCGG	3 cut(s)	23, 356, 891
HhaI	GCGC	3 cut(s)	632, 690, 900
Hin1II	CATG	2 cut(s)	162, 636
Hin6I	GCGC	3 cut(s)	630, 688, 898
HinP1I	GCGC	3 cut(s)	630, 688, 898
HincII	GTYRAC	2 cut(s)	249, 602
HindII	GTYRAC	2 cut(s)	249, 602
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	3 cut(s)	104, 120, 799
HpaI	GTTAAC	2 cut(s)	249, 602
HpaII	CCGG	3 cut(s)	23, 356, 891
HphI	GGTGA	2 cut(s)	323, 737
Hpy166II	GTNNAC	3 cut(s)	249, 602, 745
Hpy188I	TCNGA	8 cut(s)	49, 119, 145, 281, 414, 508, 804, 860
Hpy188III	TCNNGA	2 cut(s)	205, 772
Hpy8I	GTNNAC	3 cut(s)	249, 602, 745
Hpy99I	CGWCG	3 cut(s)	81, 84, 559
HpyAV	CCTTC	3 cut(s)	369, 758, 766
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	2 cut(s)	2, 201
HpyCH4V	TGCA	6 cut(s)	225, 424, 597, 656, 813, 913
HpyF10VI	GCNNNNNNNGC	2 cut(s)	696, 705
HpyF3I	CTNAG	4 cut(s)	194, 206, 545, 643
HpySE526I	ACGT	2 cut(s)	2, 201
Hsp92II	CATG	2 cut(s)	162, 636
HspAI	GCGC	3 cut(s)	630, 688, 898
KspAI	GTTAAC	2 cut(s)	249, 602
Kzo9I	GATC	3 cut(s)	140, 175, 840
LguI	GCTCTTC	2 cut(s)	267, 569
LmnI	GCTCC	4 cut(s)	136, 183, 511, 878
Lsp1109I	GCAGC	6 cut(s)	339, 465, 468, 528, 669, 925
LweI	GCATC	2 cut(s)	201, 411
MaeI	CTAG	2 cut(s)	314, 605
MaeII	ACGT	2 cut(s)	2, 201
MaeIII	GTNAC	3 cut(s)	3, 319, 486
MalI	GATC	3 cut(s)	142, 177, 842
MboI	GATC	3 cut(s)	140, 175, 840
MboII	GAAGA	8 cut(s)	55, 254, 284, 520, 586, 736, 743, 917
MfeI	CAATTG	1 cut(s)	929
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	7 cut(s)	166, 303, 433, 472, 562, 662, 929
MlyI	GAGTC	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	426
MroXI	GAANNNNTTC	2 cut(s)	54, 291
MseI	TTAA	3 cut(s)	248, 274, 601
MspI	CCGG	3 cut(s)	23, 356, 891
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	929
MvnI	CGCG	2 cut(s)	630, 688
MwoI	GCNNNNNNNGC	2 cut(s)	696, 705
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	140, 175, 840
NlaIII	CATG	2 cut(s)	162, 636
NlaIV	GGNNCC	4 cut(s)	132, 185, 513, 626
NmuCI	GTSAC	1 cut(s)	486
NsiI	ATGCAT	1 cut(s)	426
PciSI	GCTCTTC	2 cut(s)	267, 569
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdmI	GAANNNNTTC	2 cut(s)	54, 291
PfeI	GAWTC	2 cut(s)	120, 799
PkrI	GCNGC	7 cut(s)	354, 480, 483, 543, 684, 687, 915
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	4 cut(s)	132, 185, 513, 626
PspPI	GGNCC	1 cut(s)	145
PstI	CTGCAG	2 cut(s)	227, 599
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SacI	GAGCTC	1 cut(s)	262
SapI	GCTCTTC	2 cut(s)	267, 569
SaqAI	TTAA	3 cut(s)	248, 274, 601
SatI	GCNGC	7 cut(s)	353, 479, 482, 542, 683, 686, 914
Sau3AI	GATC	3 cut(s)	140, 175, 840
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	2 cut(s)	201, 411
SfcI	CTRYAG	2 cut(s)	223, 595
SgrAI	CRCCGGYG	1 cut(s)	890
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	7 cut(s)	166, 303, 433, 472, 562, 662, 929
SsiI	CCGC	5 cut(s)	101, 296, 628, 686, 876
SspMI	CTAG	2 cut(s)	314, 605
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	827, 839
TasI	AATT	7 cut(s)	166, 303, 433, 472, 562, 662, 929
TauI	GCSGC	1 cut(s)	688
TfiI	GAWTC	2 cut(s)	120, 799
Tru1I	TTAA	3 cut(s)	248, 274, 601
Tru9I	TTAA	3 cut(s)	248, 274, 601
TscAI	CASTG	2 cut(s)	227, 658
TseFI	GTSAC	1 cut(s)	486
TseI	GCWGC	6 cut(s)	352, 478, 481, 541, 682, 913
Tsp45I	GTSAC	1 cut(s)	486
TspDTI	ATGAA	3 cut(s)	407, 796, 895
TspGWI	ACGGA	1 cut(s)	805
TspRI	CASTG	2 cut(s)	227, 658
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	166
XmnI	GAANNNNTTC	2 cut(s)	54, 291
XspI	CTAG	2 cut(s)	314, 605
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.