Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007950

Physical Location & Seq

Genomic Coordinates Forward (+)

19798107 .. 19800136

Gene Structure 2030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGGCTTTGAGGTGTTGAAGCTGAAATTGATGCCTAGTTCATTCCGTCGGCGCGTCATCTTACGCGCCCTCGTGATCGTCTGCGCTTTCTCTGTTGTATCTGTTTTGCGAAACCTCGCCGGAGCTTACGAAGGAGAGACTATTAATAATACTCAGCCGTGTAAGGTTGATGAATGCGCCGTGAATTTCGCGTTTCTAGGTCCGTTTCTTTTCTCAGGTAACGGATTGTTGTTCTCCAATAGATTCTTGAAACCTGTTTGGAACTATTTGGAATCTGACAAATGTAAGGACAACATTTATTTGACTACTCAAGTTGTCAGAGAGCTTACTGGTATGAATCTGCTGAGTAATGATTCAAAAGCTCTCTGTATTGGTCGGAGATCGGTTTCAGCTGTTCTTGCGATGAATCGACAAGGGATCTCTGATGTTAGTGTGGCTTATATGCCACCTGTTTTCGCTTTCAAGCATAGGAAGTTCACAAGTGAGCTACATTATGAGGATGCTTCTTTTGGTTTTGTGTTTTCTATGGATCTTGAGTCAGTTGCTGTCCCTGCTTCACTTGTTTATGAGATCGAGCGTATACTTAAGCCCGGTGGAACTGGGGCTATGCTTGTCGGTACTACTAGTGGGTCTGACTCTAACGAGTTGGTTAGATCCGTTTCGCCTGTTTCTTCATTGCTGAAGAACTCAAGTGTTGTTCATGTTGCTTCATTGGGTAAACAGGTTTTGGTTGTATTCAAAAGAGATGGAGAAGATAGTTTCCGCTTGGATCAAACTCATCATGACTTTCCTGCTGATTGCTCGTCTGTTCTCAACAACCGGCCATACATTGGATTATTGGAGCCTCTTCTGGATGAAAAACGTTCGGATTTCGAGAGACGGATTCATTACTTGCCTGAGTTCATTGATCTCTCTTCTAGGAAGAGGCTGGTTTATATTGATATCGGGGCAGTGGATCATGTGAAAGCAAGATCGAACTGGTTCTTCCCATCGTACCCGATTGATAGGAAAGCTTTTAATAGCTACTTTGTGCATCACAACACATCTATCTTGACTTCTTATGTCAAAAGCCCTGGTGTAACCTTCATCTATCATCCAGGACTCGCAGCAACTAAAACTACAATAGCCAATACCGGAGATCACGAAGAACCTTTTGTGGAAGATGATAGCTTTGATTTTCTAGCATGGTTCAAGGAAACTGCTAGCTTCGCTGATTTTGTGGTTCTGAAGATGAACACAAGCGATACTGAGCTGAAGTTTCTCTCAGAGCTGATAAAGACAGGAGCTATCTGCTCAGTTGATGAACTGTTTCTTCACTGCACAGGCTACAGCGACTGCACCGGTATCATTAAAAGCCTCAGAAACAGTGGCGTCTTTGTCCATCAATGGTGGGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

466

Amino Acids

52.26

Weight (kDa)

6.24

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7870	PF25276	280 - 348	1.1e-06	Domain of unknown function (DUF7870)
DUF7870	PF25276	386 - 464	1e-07	Domain of unknown function (DUF7870)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53400
fragaria_vesca	FvH4_6g15740
malus_domestica	MD04G1099200.v1.1 MD12G1119800.v1.1
prunus_persica	Prupe.6G237600_v2.0.a1
pyrus_communis	pycom04g09410 pycom12g11870
rosa_chinensis	RchiOBHm_Chr1g0337551 RchiOBHm_Chr3g0469451 RchiOBHm_Chr7g0226531
rosa_laevigata	RLG00000024349
rosa_multiflora	Rmu_co8273143.1_g000001 Rmu_sc0005274.1_g000004 Rmu_sc0008852.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411880
rosa_rugosa	Rorug03G0101700
rosa_samantha	Rh3AG150800 Rh3BG174500 Rh3CG165500 Rh3DG200900 Rh4DG150800
rosa_wichuraiana	Rw0G023820 Rw3G014240 Rw5G022020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccI	GTMKAC	1 cut(s)	580
AccII	CGCG	3 cut(s)	54, 66, 191
AciI	CCGC	1 cut(s)	763
AclI	AACGTT	1 cut(s)	862
AclWI	GGATC	5 cut(s)	425, 537, 648, 777, 963
AcoI	YGGCCR	1 cut(s)	821
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	3 cut(s)	701, 1247, 1274
AcyI	GRCGYC	1 cut(s)	1371
AfaI	GTAC	2 cut(s)	619, 995
AfiI	CCNNNNNNNGG	1 cut(s)	830
AflII	CTTAAG	1 cut(s)	584
AgeI	ACCGGT	1 cut(s)	1340
AgsI	TTSAA	6 cut(s)	19, 250, 357, 463, 739, 1192
AhlI	ACTAGT	1 cut(s)	623
AjnI	CCWGG	2 cut(s)	1072, 1096
Alw26I	GTCTC	2 cut(s)	131, 871
AlwI	GGATC	5 cut(s)	425, 537, 648, 777, 963
AlwNI	CAGNNNCTG	2 cut(s)	545, 1335
AoxI	GGCC	1 cut(s)	821
ApeKI	GCWGC	1 cut(s)	1106
ApoI	RAATTY	1 cut(s)	184
AseI	ATTAAT	1 cut(s)	144
AsiGI	ACCGGT	1 cut(s)	1340
Asp700I	GAANNNNTTC	2 cut(s)	980, 1308
AspLEI	GCGC	4 cut(s)	54, 68, 86, 179
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	591
AsuNHI	GCTAGC	1 cut(s)	1202
AvaII	GGWCC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	1118
BccI	CCATC	3 cut(s)	740, 997, 1389
BceAI	ACGGC	2 cut(s)	142, 164
BciT130I	CCWGG	2 cut(s)	1074, 1098
BcnI	CCSGG	1 cut(s)	591
BcoDI	GTCTC	2 cut(s)	131, 871
BcuI	ACTAGT	1 cut(s)	623
BfaI	CTAG	6 cut(s)	36, 197, 624, 918, 1181, 1203
BfmI	CTRYAG	1 cut(s)	1327
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	1 cut(s)	1107
BlsI	GCNGC	1 cut(s)	1108
Bme1390I	CCNGG	3 cut(s)	591, 1074, 1098
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	843
BmrFI	CCNGG	3 cut(s)	591, 1074, 1098
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	3 cut(s)	21, 490, 1042
BmtI	GCTAGC	1 cut(s)	1206
BmuI	ACTGGG	1 cut(s)	609
BpuEI	CTTGAG	3 cut(s)	294, 554, 673
BpuMI	CCSGG	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	1371
BsaJI	CCNNGG	1 cut(s)	1072
BsaWI	WCCGGW	2 cut(s)	1133, 1340
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse118I	RCCGGY	2 cut(s)	819, 1340
Bse1I	ACTGG	3 cut(s)	334, 604, 983
Bse3DI	GCAATG	1 cut(s)	674
BseBI	CCWGG	2 cut(s)	1074, 1098
BseDI	CCNNGG	1 cut(s)	1072
BseGI	GGATG	3 cut(s)	505, 859, 1093
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	8 cut(s)	167, 228, 335, 888, 1239, 1278, 1308, 1372
BseNI	ACTGG	3 cut(s)	334, 604, 983
BseXI	GCAGC	1 cut(s)	1118
BsgI	GTGCAG	2 cut(s)	1303, 1321
Bsh1236I	CGCG	3 cut(s)	54, 66, 191
BshFI	GGCC	1 cut(s)	823
BshTI	ACCGGT	1 cut(s)	1340
BsiSI	CCGG	5 cut(s)	120, 591, 820, 1134, 1341
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmAI	GTCTC	2 cut(s)	131, 871
BsmBI	CGTCTC	1 cut(s)	871
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	823
BspACI	CCGC	1 cut(s)	763
BspANI	GGCC	1 cut(s)	823
BspCNI	CTCAG	8 cut(s)	166, 227, 336, 889, 1240, 1277, 1307, 1371
BspFNI	CGCG	3 cut(s)	54, 66, 191
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	1 cut(s)	843
BspOI	GCTAGC	1 cut(s)	1206
BspPI	GGATC	5 cut(s)	425, 537, 648, 777, 963
BspTI	CTTAAG	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	2 cut(s)	819, 1340
BsrI	ACTGG	3 cut(s)	334, 604, 983
BssAI	RCCGGY	2 cut(s)	819, 1340
BssECI	CCNNGG	1 cut(s)	1072
BssNAI	GTATAC	1 cut(s)	581
BssNI	GRCGYC	1 cut(s)	1371
BssSI	CACGAG	1 cut(s)	71
Bst1107I	GTATAC	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	1074, 1098
Bst4CI	ACNGT	2 cut(s)	1308, 1367
Bst6I	CTCTTC	3 cut(s)	852, 917, 919
BstACI	GRCGYC	1 cut(s)	1371
BstAFI	CTTAAG	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	1204
BstDEI	CTNAG	8 cut(s)	153, 214, 344, 897, 1248, 1264, 1294, 1358
BstF5I	GGATG	3 cut(s)	505, 859, 1093
BstFNI	CGCG	3 cut(s)	54, 66, 191
BstHHI	GCGC	4 cut(s)	54, 68, 86, 179
BstMAI	GTCTC	2 cut(s)	131, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 551, 1208
BstNI	CCWGG	2 cut(s)	1074, 1098
BstSCI	CCNGG	3 cut(s)	589, 1072, 1096
BstSFI	CTRYAG	1 cut(s)	1327
BstUI	CGCG	3 cut(s)	54, 66, 191
BstV1I	GCAGC	1 cut(s)	1118
BstX2I	RGATCY	3 cut(s)	417, 529, 653
BstYI	RGATCY	3 cut(s)	417, 529, 653
BstZ17I	GTATAC	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	823
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	505, 859, 1093
BtsI	GCAGTG	2 cut(s)	957, 1315
BtsIMutI	CAGTG	3 cut(s)	957, 1315, 1372
Cac8I	GCNNGC	1 cut(s)	1204
CaiI	CAGNNNCTG	2 cut(s)	545, 1335
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	4 cut(s)	54, 68, 86, 179
Cfr10I	RCCGGY	2 cut(s)	819, 1340
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	2 cut(s)	43, 1360
Csp6I	GTAC	2 cut(s)	618, 994
CspAI	ACCGGT	1 cut(s)	1340
CviAII	CATG	4 cut(s)	701, 782, 959, 1185
CviQI	GTAC	2 cut(s)	618, 994
DdeI	CTNAG	8 cut(s)	153, 214, 344, 897, 1248, 1264, 1294, 1358
EaeI	YGGCCR	1 cut(s)	821
Eam1104I	CTCTTC	3 cut(s)	852, 917, 919
EarI	CTCTTC	3 cut(s)	852, 917, 919
Eco32I	GATATC	1 cut(s)	943
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	701, 1247, 1274
EcoRII	CCWGG	2 cut(s)	1072, 1096
EcoRV	GATATC	1 cut(s)	943
Esp3I	CGTCTC	1 cut(s)	871
FaeI	CATG	4 cut(s)	704, 785, 962, 1188
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	4 cut(s)	700, 781, 958, 1184
FblI	GTMKAC	1 cut(s)	580
Fnu4HI	GCNGC	1 cut(s)	1107
FokI	GGATG	3 cut(s)	512, 866, 1080
Fsp4HI	GCNGC	1 cut(s)	1107
FspBI	CTAG	6 cut(s)	36, 197, 624, 918, 1181, 1203
GlaI	GCGC	4 cut(s)	53, 67, 85, 178
GluI	GCNGC	1 cut(s)	1107
HaeIII	GGCC	1 cut(s)	823
HapII	CCGG	5 cut(s)	120, 591, 820, 1134, 1341
HgaI	GACGC	2 cut(s)	43, 1360
HhaI	GCGC	4 cut(s)	54, 68, 86, 179
Hin1I	GRCGYC	1 cut(s)	1371
Hin1II	CATG	4 cut(s)	704, 785, 962, 1188
Hin6I	GCGC	4 cut(s)	52, 66, 84, 177
HinP1I	GCGC	4 cut(s)	52, 66, 84, 177
HindIII	AAGCTT	1 cut(s)	1011
HinfI	GANTC	9 cut(s)	243, 272, 337, 353, 406, 536, 635, 883, 1101
HpaII	CCGG	5 cut(s)	120, 591, 820, 1134, 1341
Hpy166II	GTNNAC	3 cut(s)	477, 581, 719
Hpy188I	TCNGA	9 cut(s)	277, 320, 378, 424, 634, 868, 1227, 1267, 1361
Hpy188III	TCNNGA	8 cut(s)	73, 247, 533, 782, 851, 874, 1051, 1142
Hpy8I	GTNNAC	3 cut(s)	477, 581, 719
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	125, 1093
HpyCH4III	ACNGT	2 cut(s)	1308, 1367
HpyCH4IV	ACGT	1 cut(s)	862
HpyCH4V	TGCA	3 cut(s)	1033, 1320, 1338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 551, 1208
HpyF3I	CTNAG	8 cut(s)	153, 214, 344, 897, 1248, 1264, 1294, 1358
HpySE526I	ACGT	1 cut(s)	862
Hsp92I	GRCGYC	1 cut(s)	1371
Hsp92II	CATG	4 cut(s)	704, 785, 962, 1188
HspAI	GCGC	4 cut(s)	52, 66, 84, 177
LmnI	GCTCC	3 cut(s)	122, 841, 1283
Lsp1109I	GCAGC	1 cut(s)	1118
LweI	GCATC	3 cut(s)	21, 490, 1042
MaeI	CTAG	6 cut(s)	36, 197, 624, 918, 1181, 1203
MaeII	ACGT	1 cut(s)	862
MaeIII	GTNAC	2 cut(s)	218, 1078
MflI	RGATCY	3 cut(s)	417, 529, 653
MluCI	AATT	2 cut(s)	26, 184
MlyI	GAGTC	3 cut(s)	545, 629, 1095
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	7 cut(s)	4, 80, 125, 490, 855, 918, 1367
MroXI	GAANNNNTTC	2 cut(s)	980, 1308
MseI	TTAA	4 cut(s)	144, 585, 1017, 1350
MspA1I	CMGCKG	1 cut(s)	392
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	5 cut(s)	120, 591, 820, 1134, 1341
MspR9I	CCNGG	3 cut(s)	591, 1074, 1098
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	2 cut(s)	1074, 1098
MvnI	CGCG	3 cut(s)	54, 66, 191
MwoI	GCNNNNNNNGC	3 cut(s)	398, 551, 1208
NciI	CCSGG	1 cut(s)	591
NheI	GCTAGC	1 cut(s)	1202
NlaIII	CATG	4 cut(s)	704, 785, 962, 1188
NlaIV	GGNNCC	1 cut(s)	843
PagI	TCATGA	1 cut(s)	781
PctI	GAATGC	1 cut(s)	179
PdmI	GAANNNNTTC	2 cut(s)	980, 1308
PfeI	GAWTC	6 cut(s)	243, 272, 337, 353, 406, 883
PflMI	CCANNNNNTGG	1 cut(s)	830
PfoI	TCCNGGA	1 cut(s)	1096
PinAI	ACCGGT	1 cut(s)	1340
PkrI	GCNGC	1 cut(s)	1108
PleI	GAGTC	3 cut(s)	544, 629, 1095
PpsI	GAGTC	3 cut(s)	544, 629, 1095
PshBI	ATTAAT	1 cut(s)	144
Psp1406I	AACGTT	1 cut(s)	862
Psp6I	CCWGG	2 cut(s)	1072, 1096
PspGI	CCWGG	2 cut(s)	1072, 1096
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	200
PstNI	CAGNNNCTG	2 cut(s)	545, 1335
PsuI	RGATCY	3 cut(s)	417, 529, 653
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	619, 995
RsaNI	GTAC	2 cut(s)	618, 994
SaqAI	TTAA	4 cut(s)	144, 585, 1017, 1350
SatI	GCNGC	1 cut(s)	1107
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	3 cut(s)	545, 629, 1095
ScrFI	CCNGG	3 cut(s)	591, 1074, 1098
SfaNI	GCATC	3 cut(s)	21, 490, 1042
SfcI	CTRYAG	1 cut(s)	1327
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	4 cut(s)	309, 533, 584, 688
SmoI	CTYRAG	4 cut(s)	309, 533, 584, 688
SpeI	ACTAGT	1 cut(s)	623
Sse9I	AATT	2 cut(s)	26, 184
SsiI	CCGC	1 cut(s)	763
SspMI	CTAG	6 cut(s)	36, 197, 624, 918, 1181, 1203
StyD4I	CCNGG	3 cut(s)	589, 1072, 1096
TaaI	ACNGT	2 cut(s)	1308, 1367
TaiI	ACGT	1 cut(s)	865
TaqI	TCGA	4 cut(s)	409, 573, 873, 974
TasI	AATT	2 cut(s)	26, 184
TfiI	GAWTC	6 cut(s)	243, 272, 337, 353, 406, 883
Tru1I	TTAA	4 cut(s)	144, 585, 1017, 1350
Tru9I	TTAA	4 cut(s)	144, 585, 1017, 1350
TscAI	CASTG	3 cut(s)	957, 1322, 1372
TseI	GCWGC	1 cut(s)	1106
TspGWI	ACGGA	5 cut(s)	35, 192, 237, 646, 895
TspRI	CASTG	3 cut(s)	957, 1322, 1372
Van91I	CCANNNNNTGG	1 cut(s)	830
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	200
VspI	ATTAAT	1 cut(s)	144
XapI	RAATTY	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	580
XmnI	GAANNNNTTC	2 cut(s)	980, 1308
XspI	CTAG	6 cut(s)	36, 197, 624, 918, 1181, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.