Rw5G022020

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007950
Physical Location & Seq
Forward (+)
30106971 .. 30107930
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022020.1

Sequence Viewer

Length: 912 bp
ATGGGCGAGCAGCTTTTGAACGGTGATAAGGCTCTTTGTGTCGGTGAAGGATCGGCCTCGGCCGTGATGGCGTTGCAAGATTTGGGGTTTCCCAATGCTCGTGGTGTTTATGAACACCGATTCTTCTCCCTCAAGCGCAAACAGTTTGGGGATCTAGACAAGGTTTCAGTCCCTGCTCTGCTTGTGCTCGAGATTGAGTGCGTTCTTAGCCCAGGTGGAATTGGGGCTATGCTTGTTGGTAGCAGTGGTTTGGCTCCGAATAGCCTGATTAGGTCTGCTACCCCAATTTCTTCATTGCTGAAGAGCTCCAGTGTCGTGCATGTTAATTATATCAGCAATTTCACACTGGTTGTGTTCAGGAAGAGTTACGAAAATGCGGGTCTATTTGAGCAGTATCGCCTTCCGGCTGACTGCCAATCCCTCACGAACAATAGACCTTTGATCGAGAAAATGGAGCCTCTTGTGAAGGAAAAGCCAGTGGAGGACGGGAAGATGGCTACTTATTTGCCTAATTTTATTGATGTTTCCTCAAAGAAGCGGTTGGTCTATATCGATATTGGGGCAGCAGAGAACCTGAAATCAAATGTCACAGACTGGTTCCTGCCTTCTTATCCGATTACACACAGAGCTTTCCATGTCTATTTTGTTGACCACAACACTTCTGTGCTATTGTCTTATGTCAAAAAGCTGGGAATCACCTTCGTTTATCATCCAGGGCTGGTTGGAATTAAGGACAAGGACAATGTTAACATTGAAGCAGATGCAGAGCCCTATGTCGCAGATGAAGGGTTTGATTTTCTTGTTTGGTTTAAAGAAACAGTGCAGCATGCCGAGTTTGTGGTGCTGAAGATGAATGCAGGCAGTGTGGAATTGAAGTTCCTCATCCACACGAGGCCACTTCCAATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

303

Amino Acids

33.58

Weight (kDa)

6.25

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7870 PF25276 161 - 221 1e-05 Domain of unknown function (DUF7870)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 377, 538
AclWI GGATC 2 cut(s) 58, 159
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 320, 866
AgsI TTSAA 3 cut(s) 19, 755, 874
AjnI CCWGG 2 cut(s) 211, 712
AleI CACNNNNGTG 1 cut(s) 662
AloI GAACNNNNNNTCC 2 cut(s) 860, 892
AluBI AGCT 4 cut(s) 13, 306, 629, 688
AluI AGCT 4 cut(s) 13, 306, 629, 688
Alw21I GWGCWC 2 cut(s) 189, 308
AlwI GGATC 2 cut(s) 58, 159
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 3 cut(s) 54, 60, 893
ApeKI GCWGC 3 cut(s) 10, 563, 823
AspLEI GCGC 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 35, 56, 688
AvaI CYCGRG 1 cut(s) 188
BanII GRGCYC 2 cut(s) 308, 771
BauI CACGAG 2 cut(s) 99, 889
Bbv12I GWGCWC 2 cut(s) 189, 308
BbvI GCAGC 3 cut(s) 22, 575, 835
BccI CCATC 2 cut(s) 61, 487
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 213, 714
BfaI CTAG 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 3 cut(s) 11, 564, 824
BlsI GCNGC 3 cut(s) 12, 565, 825
Bme1390I CCNGG 2 cut(s) 213, 714
BmeT110I CYCGRG 1 cut(s) 188
BmiI GGNNCC 3 cut(s) 255, 456, 599
BmrFI CCNGG 2 cut(s) 213, 714
BmsI GCATC 1 cut(s) 751
BpmI CTGGAG 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 116
Bsa29I ATCGAT 1 cut(s) 552
BsaJI CCNNGG 3 cut(s) 57, 211, 713
Bse1I ACTGG 4 cut(s) 309, 351, 476, 599
Bse3DI GCAATG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 213, 714
BseCI ATCGAT 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 57, 211, 713
BseGI GGATG 2 cut(s) 709, 882
BseMI GCAATG 1 cut(s) 293
BseNI ACTGG 4 cut(s) 309, 351, 476, 599
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 3 cut(s) 22, 575, 835
BseYI CCCAGC 1 cut(s) 688
BsgI GTGCAG 1 cut(s) 842
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 56, 62, 895
BshVI ATCGAT 1 cut(s) 552
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 189, 308
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 859
BsnI GGCC 3 cut(s) 56, 62, 895
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 3 cut(s) 189, 308, 771
Bsp143I GATC 3 cut(s) 50, 151, 441
BspACI CCGC 2 cut(s) 377, 538
BspANI GGCC 3 cut(s) 56, 62, 895
BspDI ATCGAT 1 cut(s) 552
BspLI GGNNCC 3 cut(s) 255, 456, 599
BspPI GGATC 2 cut(s) 58, 159
BspQI GCTCTTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 293
BsrI ACTGG 4 cut(s) 309, 351, 476, 599
BssECI CCNNGG 3 cut(s) 57, 211, 713
BssMI GATC 3 cut(s) 50, 151, 441
BssSI CACGAG 2 cut(s) 99, 889
Bst2BI CACGAG 2 cut(s) 99, 889
Bst2UI CCWGG 2 cut(s) 213, 714
Bst4CI ACNGT 3 cut(s) 23, 144, 820
Bst6I CTCTTC 2 cut(s) 296, 356
BstC8I GCNNGC 3 cut(s) 8, 828, 859
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 2 cut(s) 709, 882
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 3 cut(s) 53, 154, 444
BstMBI GATC 3 cut(s) 50, 151, 441
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 68, 207
BstNI CCWGG 2 cut(s) 213, 714
BstNSI RCATGY 2 cut(s) 323, 830
BstSCI CCNGG 2 cut(s) 211, 712
BstV1I GCAGC 3 cut(s) 22, 575, 835
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BstZI CGGCCG 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 552
BsuRI GGCC 3 cut(s) 56, 62, 895
BsuTUI ATCGAT 1 cut(s) 552
BtsCI GGATG 2 cut(s) 709, 882
BtsI GCAGTG 2 cut(s) 250, 868
BtsIMutI CAGTG 6 cut(s) 250, 316, 344, 483, 825, 868
Cac8I GCNNGC 3 cut(s) 8, 828, 859
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 552
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 3 cut(s) 320, 635, 827
DdeI CTNAG 1 cut(s) 206
DpnI GATC 3 cut(s) 52, 153, 443
DpnII GATC 3 cut(s) 50, 151, 441
DraI TTTAAA 1 cut(s) 811
EaeI YGGCCR 1 cut(s) 60
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 296, 356
EarI CTCTTC 2 cut(s) 296, 356
Ecl136II GAGCTC 1 cut(s) 306
EclXI CGGCCG 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 308, 771
Eco52I CGGCCG 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 306
Eco57I CTGAAG 2 cut(s) 320, 866
Eco88I CYCGRG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 211, 712
EcoT38I GRGCYC 2 cut(s) 308, 771
FaeI CATG 3 cut(s) 323, 638, 830
FaiI YATR 9 cut(s) 111, 230, 321, 330, 549, 636, 678, 774, 828
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 319, 634, 826
FauI CCCGC 1 cut(s) 370
Fnu4HI GCNGC 3 cut(s) 11, 564, 824
FokI GGATG 2 cut(s) 696, 869
FriOI GRGCYC 2 cut(s) 308, 771
Fsp4HI GCNGC 3 cut(s) 11, 564, 824
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 137
GluI GCNGC 3 cut(s) 11, 564, 824
GsaI CCCAGC 1 cut(s) 692
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 3 cut(s) 56, 62, 895
HapII CCGG 1 cut(s) 404
HhaI GCGC 1 cut(s) 138
Hin1II CATG 3 cut(s) 323, 638, 830
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HincII GTYRAC 2 cut(s) 649, 748
HindII GTYRAC 2 cut(s) 649, 748
HinfI GANTC 2 cut(s) 120, 693
HpaI GTTAAC 1 cut(s) 748
HpaII CCGG 1 cut(s) 404
HphI GGTGA 3 cut(s) 35, 56, 688
Hpy166II GTNNAC 2 cut(s) 649, 748
Hpy188I TCNGA 2 cut(s) 258, 615
Hpy188III TCNNGA 5 cut(s) 155, 190, 358, 424, 445
Hpy8I GTNNAC 2 cut(s) 649, 748
HpyAV CCTTC 6 cut(s) 41, 410, 460, 615, 709, 779
HpyCH4III ACNGT 3 cut(s) 23, 144, 820
HpyCH4V TGCA 5 cut(s) 76, 319, 764, 823, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 207
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 3 cut(s) 323, 638, 830
HspAI GCGC 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 748
Kzo9I GATC 3 cut(s) 50, 151, 441
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 3 cut(s) 259, 311, 454
Lsp1109I GCAGC 3 cut(s) 22, 575, 835
LweI GCATC 1 cut(s) 751
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 365, 586
MalI GATC 3 cut(s) 52, 153, 443
MboI GATC 3 cut(s) 50, 151, 441
MboII GAAGA 6 cut(s) 115, 282, 313, 373, 502, 859
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 3 cut(s) 189, 308, 771
MluCI AATT 8 cut(s) 219, 285, 325, 337, 511, 726, 869, 903
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 8 cut(s) 67, 140, 431, 468, 475, 538, 885, 890
MseI TTAA 4 cut(s) 324, 729, 747, 810
MslI CAYNNNNRTG 1 cut(s) 662
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 2 cut(s) 213, 714
Mva1269I GAATGC 1 cut(s) 859
MvaI CCWGG 2 cut(s) 213, 714
MwoI GCNNNNNNNGC 2 cut(s) 68, 207
NdeII GATC 3 cut(s) 50, 151, 441
NlaIII CATG 3 cut(s) 323, 638, 830
NlaIV GGNNCC 3 cut(s) 255, 456, 599
NmeAIII GCCGAG 2 cut(s) 38, 856
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 2 cut(s) 323, 830
OliI CACNNNNGTG 1 cut(s) 662
PaeI GCATGC 1 cut(s) 830
PaeR7I CTCGAG 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 296
PctI GAATGC 1 cut(s) 859
PfeI GAWTC 2 cut(s) 120, 693
PkrI GCNGC 3 cut(s) 12, 565, 825
Psp124BI GAGCTC 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 211, 712
PspFI CCCAGC 1 cut(s) 688
PspGI CCWGG 2 cut(s) 211, 712
PspN4I GGNNCC 3 cut(s) 255, 456, 599
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 4 cut(s) 324, 729, 747, 810
SatI GCNGC 3 cut(s) 11, 564, 824
Sau3AI GATC 3 cut(s) 50, 151, 441
ScrFI CCNGG 2 cut(s) 213, 714
SduI GDGCHC 3 cut(s) 189, 308, 771
SfaNI GCATC 1 cut(s) 751
Sfr274I CTCGAG 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 131, 188
SmoI CTYRAG 2 cut(s) 131, 188
SphI GCATGC 1 cut(s) 830
Sse9I AATT 8 cut(s) 219, 285, 325, 337, 511, 726, 869, 903
SsiI CCGC 2 cut(s) 377, 538
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 211, 712
TaaI ACNGT 3 cut(s) 23, 144, 820
TaqI TCGA 3 cut(s) 189, 444, 552
TasI AATT 8 cut(s) 219, 285, 325, 337, 511, 726, 869, 903
TfiI GAWTC 2 cut(s) 120, 693
Tru1I TTAA 4 cut(s) 324, 729, 747, 810
Tru9I TTAA 4 cut(s) 324, 729, 747, 810
TscAI CASTG 6 cut(s) 250, 316, 351, 483, 825, 868
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 3 cut(s) 10, 563, 823
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 4 cut(s) 126, 282, 798, 866
TspRI CASTG 6 cut(s) 250, 316, 351, 483, 825, 868
XbaI TCTAGA 1 cut(s) 154
XceI RCATGY 2 cut(s) 323, 830
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.