Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008852.1

Orthogroup ID

OG0007950

Physical Location & Seq

Genomic Coordinates Reverse (-)

21421 .. 22533

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008852.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgggcgagcagcttttgaacggtgataaagctctctgtgtcggtgaaggatcggccgaggccgtgatggcgttgcaagatttggggtttcccaatgctcgtggtgtttatgaacaccgattcttctccctcaagcgcaaacagtttgtgtatgagatttactatgacgacaagtctttcgatttcgtgttctgcagggatctagacaaggtttcagtccctgctctgcttgtgctcgagattgagcgcgttcttagcccaggtggaattggggctatgcttgttggtagcagtggtttggctccgaatagcctgattaggtctgctaccccaatttcttcattgctgaagagctccagtgtcgtgcatgttaattatatcagcaatttcacactggttgtgttcaggaagagttacgaaaatgttggtctatttgagcagtatcgccttccggctgactgccaatccctcacaaacaatagacctttgatcgagaaaatggagcctcttgtgaaggaaaagccagtggaggacgggaagatggctacttatttgcctaattttattgatgtttcctcaaagaagcggttggtctatatcgatattggggcagcagagcacctgaaatcaaatgtcacagactggttcctgccttcttatccgattacacacagagctttccatgtctattttgttgaccacaacacttctgtgctattgtcttatgtcaaaaagccgggaatcaccttcgtttatcatccagggctggctggaattaaggacaaggacaatgttaacatcgaagcagatgcagagccctatgtcgcagatgaagggtttgattttcttgtttggtttaaagaaacagtgcagcatgcggagtttgtggtgctgaagatgaatgcaggcagtgtagaattgaagttcctgagggatctgtttgagagtggagccatatgctttgtcgacgagctgtttcttcactgctctggccacatagacggggaaggtccaatgccggtagactgcatggacatcttcaagagcctccgcagcagtggtgtgtatgtgcatcagtggtggggagaagacaaccccgtcaatattatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

370

Amino Acids

41.58

Weight (kDa)

5.33

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53400
fragaria_vesca	FvH4_6g15740
malus_domestica	MD04G1099200.v1.1 MD12G1119800.v1.1
prunus_persica	Prupe.6G237600_v2.0.a1
pyrus_communis	pycom04g09410 pycom12g11870
rosa_chinensis	RchiOBHm_Chr1g0337551 RchiOBHm_Chr3g0469451 RchiOBHm_Chr7g0226531
rosa_laevigata	RLG00000024349
rosa_multiflora	Rmu_co8273143.1_g000001 Rmu_sc0005274.1_g000004 Rmu_sc0008852.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411880
rosa_rugosa	Rorug03G0101700
rosa_samantha	Rh3AG150800 Rh3BG174500 Rh3CG165500 Rh3DG200900 Rh4DG150800
rosa_wichuraiana	Rw0G023820 Rw3G014240 Rw5G022020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1097
AccI	GTMKAC	2 cut(s)	966, 1023
AccII	CGCG	1 cut(s)	249
AciI	CCGC	3 cut(s)	586, 878, 1051
AclWI	GGATC	3 cut(s)	58, 207, 942
AcoI	YGGCCR	2 cut(s)	54, 991
AcuI	CTGAAG	2 cut(s)	368, 914
AgsI	TTSAA	3 cut(s)	19, 922, 1042
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	259, 760
AleI	CACNNNNGTG	1 cut(s)	710
AluBI	AGCT	5 cut(s)	13, 32, 354, 677, 973
AluI	AGCT	5 cut(s)	13, 32, 354, 677, 973
Alw21I	GWGCWC	3 cut(s)	237, 356, 621
AlwI	GGATC	3 cut(s)	58, 207, 942
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	54, 60, 991
ApeKI	GCWGC	4 cut(s)	10, 611, 871, 1053
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	2 cut(s)	138, 249
AspS9I	GGNCC	1 cut(s)	1010
AsuC2I	CCSGG	1 cut(s)	738
AsuHPI	GGTGA	3 cut(s)	35, 56, 736
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	1010
AxyI	CCTNAGG	1 cut(s)	929
BalI	TGGCCA	1 cut(s)	993
BanII	GRGCYC	2 cut(s)	356, 819
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	1095
Bbv12I	GWGCWC	3 cut(s)	237, 356, 621
BbvI	GCAGC	4 cut(s)	22, 623, 883, 1065
BccI	CCATC	2 cut(s)	61, 535
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	2 cut(s)	261, 762
BcnI	CCSGG	1 cut(s)	738
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	4 cut(s)	11, 612, 872, 1054
BlsI	GCNGC	4 cut(s)	12, 613, 873, 1055
Bme1390I	CCNGG	3 cut(s)	261, 738, 762
Bme18I	GGWCC	1 cut(s)	1010
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	1010
BmiI	GGNNCC	4 cut(s)	303, 504, 647, 952
BmrFI	CCNGG	3 cut(s)	261, 738, 762
BmsI	GCATC	2 cut(s)	799, 1081
BpiI	GAAGAC	1 cut(s)	1095
BpmI	CTGGAG	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	57, 259, 761
Bse118I	RCCGGY	1 cut(s)	1018
Bse1I	ACTGG	4 cut(s)	357, 399, 524, 647
Bse21I	CCTNAGG	1 cut(s)	929
Bse3DI	GCAATG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	261, 762
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	57, 259, 761
BseGI	GGATG	1 cut(s)	757
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	920
BseNI	ACTGG	4 cut(s)	357, 399, 524, 647
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	4 cut(s)	22, 623, 883, 1065
BsgI	GTGCAG	1 cut(s)	890
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	56, 62, 993
BshVI	ATCGAT	1 cut(s)	600
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	3 cut(s)	237, 356, 621
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	3 cut(s)	452, 737, 1019
BslFI	GGGAC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	3 cut(s)	56, 62, 993
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	4 cut(s)	237, 356, 621, 819
Bsp143I	GATC	4 cut(s)	50, 199, 489, 934
BspACI	CCGC	3 cut(s)	586, 878, 1051
BspANI	GGCC	3 cut(s)	56, 62, 993
BspCNI	CTCAG	1 cut(s)	921
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	303, 504, 647, 952
BspMAI	CTGCAG	1 cut(s)	197
BspPI	GGATC	3 cut(s)	58, 207, 942
BspQI	GCTCTTC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	1018
BsrI	ACTGG	4 cut(s)	357, 399, 524, 647
BssAI	RCCGGY	1 cut(s)	1018
BssECI	CCNNGG	3 cut(s)	57, 259, 761
BssMI	GATC	4 cut(s)	50, 199, 489, 934
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	261, 762
Bst4CI	ACNGT	3 cut(s)	23, 144, 868
Bst6I	CTCTTC	2 cut(s)	344, 404
BstC8I	GCNNGC	4 cut(s)	8, 768, 876, 907
BstDEI	CTNAG	2 cut(s)	254, 929
BstF5I	GGATG	1 cut(s)	757
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	138, 249
BstKTI	GATC	4 cut(s)	53, 202, 492, 937
BstMBI	GATC	4 cut(s)	50, 199, 489, 934
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 255, 1053
BstNI	CCWGG	2 cut(s)	261, 762
BstNSI	RCATGY	2 cut(s)	371, 878
BstSCI	CCNGG	3 cut(s)	259, 736, 760
BstSFI	CTRYAG	1 cut(s)	193
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	22, 623, 883, 1065
BstV2I	GAAGAC	1 cut(s)	1095
BstX2I	RGATCY	2 cut(s)	199, 934
BstYI	RGATCY	2 cut(s)	199, 934
BstZI	CGGCCG	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	600
Bsu36I	CCTNAGG	1 cut(s)	929
BsuRI	GGCC	3 cut(s)	56, 62, 993
BsuTUI	ATCGAT	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	757
BtsI	GCAGTG	4 cut(s)	298, 916, 982, 1063
BtsIMutI	CAGTG	9 cut(s)	298, 364, 392, 531, 873, 916, 982, 1063, 1082
Cac8I	GCNNGC	4 cut(s)	8, 768, 876, 907
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	2 cut(s)	138, 249
Cfr10I	RCCGGY	1 cut(s)	1018
Cfr13I	GGNCC	1 cut(s)	1010
ClaI	ATCGAT	1 cut(s)	600
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	4 cut(s)	368, 683, 875, 1030
DdeI	CTNAG	2 cut(s)	254, 929
DpnI	GATC	4 cut(s)	52, 201, 491, 936
DpnII	GATC	4 cut(s)	50, 199, 489, 934
DraI	TTTAAA	1 cut(s)	859
DrdI	GACNNNNNNGTC	1 cut(s)	1097
DriI	GACNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	1097
EaeI	YGGCCR	2 cut(s)	54, 991
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	344, 404
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	2 cut(s)	344, 404
Ecl136II	GAGCTC	1 cut(s)	354
EclXI	CGGCCG	1 cut(s)	54
Eco24I	GRGCYC	2 cut(s)	356, 819
Eco47I	GGWCC	1 cut(s)	1010
Eco52I	CGGCCG	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	354
Eco57I	CTGAAG	2 cut(s)	368, 914
Eco81I	CCTNAGG	1 cut(s)	929
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	354
EcoRII	CCWGG	2 cut(s)	259, 760
EcoT38I	GRGCYC	2 cut(s)	356, 819
FaeI	CATG	4 cut(s)	371, 686, 878, 1033
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	4 cut(s)	367, 682, 874, 1029
FauNDI	CATATG	1 cut(s)	956
FblI	GTMKAC	2 cut(s)	966, 1023
Fnu4HI	GCNGC	4 cut(s)	11, 612, 872, 1054
FokI	GGATG	1 cut(s)	744
FriOI	GRGCYC	2 cut(s)	356, 819
Fsp4HI	GCNGC	4 cut(s)	11, 612, 872, 1054
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	2 cut(s)	137, 248
GluI	GCNGC	4 cut(s)	11, 612, 872, 1054
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	3 cut(s)	56, 62, 993
HapII	CCGG	3 cut(s)	452, 737, 1019
HhaI	GCGC	2 cut(s)	138, 249
Hin1II	CATG	4 cut(s)	371, 686, 878, 1033
Hin6I	GCGC	2 cut(s)	136, 247
HinP1I	GCGC	2 cut(s)	136, 247
HincII	GTYRAC	3 cut(s)	697, 796, 967
HindII	GTYRAC	3 cut(s)	697, 796, 967
HinfI	GANTC	2 cut(s)	120, 741
HpaI	GTTAAC	1 cut(s)	796
HpaII	CCGG	3 cut(s)	452, 737, 1019
HphI	GGTGA	3 cut(s)	35, 56, 736
Hpy166II	GTNNAC	4 cut(s)	697, 796, 967, 1024
Hpy188I	TCNGA	2 cut(s)	306, 663
Hpy188III	TCNNGA	6 cut(s)	203, 238, 406, 493, 928, 1042
Hpy8I	GTNNAC	4 cut(s)	697, 796, 967, 1024
Hpy99I	CGWCG	1 cut(s)	971
HpyAV	CCTTC	7 cut(s)	41, 458, 508, 663, 757, 827, 1001
HpyCH4III	ACNGT	3 cut(s)	23, 144, 868
HpyCH4V	TGCA	8 cut(s)	76, 195, 367, 812, 871, 905, 1029, 1072
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 255, 1053
HpyF3I	CTNAG	2 cut(s)	254, 929
Hsp92II	CATG	4 cut(s)	371, 686, 878, 1033
HspAI	GCGC	2 cut(s)	136, 247
KspAI	GTTAAC	1 cut(s)	796
Kzo9I	GATC	4 cut(s)	50, 199, 489, 934
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	4 cut(s)	307, 359, 502, 950
Lsp1109I	GCAGC	4 cut(s)	22, 623, 883, 1065
LweI	GCATC	2 cut(s)	799, 1081
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	413, 634
MalI	GATC	4 cut(s)	52, 201, 491, 936
MboI	GATC	4 cut(s)	50, 199, 489, 934
MboII	GAAGA	9 cut(s)	115, 330, 361, 421, 550, 907, 971, 1030, 1100
MflI	RGATCY	2 cut(s)	199, 934
MhlI	GDGCHC	4 cut(s)	237, 356, 621, 819
MlsI	TGGCCA	1 cut(s)	993
MluCI	AATT	7 cut(s)	267, 333, 373, 385, 559, 774, 917
MluNI	TGGCCA	1 cut(s)	993
MnlI	CCTC	8 cut(s)	52, 140, 479, 516, 523, 586, 924, 1058
Mox20I	TGGCCA	1 cut(s)	993
MscI	TGGCCA	1 cut(s)	993
MseI	TTAA	4 cut(s)	372, 777, 795, 858
MslI	CAYNNNNRTG	1 cut(s)	710
Msp20I	TGGCCA	1 cut(s)	993
MspI	CCGG	3 cut(s)	452, 737, 1019
MspR9I	CCNGG	3 cut(s)	261, 738, 762
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	2 cut(s)	261, 762
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	68, 255, 1053
NciI	CCSGG	1 cut(s)	738
NdeI	CATATG	1 cut(s)	956
NdeII	GATC	4 cut(s)	50, 199, 489, 934
NlaIII	CATG	4 cut(s)	371, 686, 878, 1033
NlaIV	GGNNCC	4 cut(s)	303, 504, 647, 952
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	634
NspI	RCATGY	2 cut(s)	371, 878
OliI	CACNNNNGTG	1 cut(s)	710
PaeI	GCATGC	1 cut(s)	878
PaeR7I	CTCGAG	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	344
PctI	GAATGC	1 cut(s)	907
PfeI	GAWTC	2 cut(s)	120, 741
PkrI	GCNGC	4 cut(s)	12, 613, 873, 1055
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	259, 760
PspGI	CCWGG	2 cut(s)	259, 760
PspN4I	GGNNCC	4 cut(s)	303, 504, 647, 952
PspPI	GGNCC	1 cut(s)	1010
PstI	CTGCAG	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	2 cut(s)	199, 934
RseI	CAYNNNNRTG	1 cut(s)	710
SacI	GAGCTC	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	965
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	4 cut(s)	372, 777, 795, 858
SatI	GCNGC	4 cut(s)	11, 612, 872, 1054
Sau3AI	GATC	4 cut(s)	50, 199, 489, 934
Sau96I	GGNCC	1 cut(s)	1010
ScrFI	CCNGG	3 cut(s)	261, 738, 762
SduI	GDGCHC	4 cut(s)	237, 356, 621, 819
SfaNI	GCATC	2 cut(s)	799, 1081
SfcI	CTRYAG	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	1010
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	2 cut(s)	131, 236
SmoI	CTYRAG	2 cut(s)	131, 236
SphI	GCATGC	1 cut(s)	878
Sse9I	AATT	7 cut(s)	267, 333, 373, 385, 559, 774, 917
SsiI	CCGC	3 cut(s)	586, 878, 1051
SspI	AATATT	1 cut(s)	1105
SspMI	CTAG	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	259, 736, 760
TaaI	ACNGT	3 cut(s)	23, 144, 868
TaqI	TCGA	6 cut(s)	180, 237, 492, 600, 801, 966
TasI	AATT	7 cut(s)	267, 333, 373, 385, 559, 774, 917
TfiI	GAWTC	2 cut(s)	120, 741
Tru1I	TTAA	4 cut(s)	372, 777, 795, 858
Tru9I	TTAA	4 cut(s)	372, 777, 795, 858
TscAI	CASTG	9 cut(s)	298, 364, 399, 531, 873, 916, 989, 1063, 1082
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	4 cut(s)	10, 611, 871, 1053
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	4 cut(s)	126, 330, 846, 914
TspRI	CASTG	9 cut(s)	298, 364, 399, 531, 873, 916, 989, 1063, 1082
VpaK11BI	GGWCC	1 cut(s)	1010
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	2 cut(s)	371, 878
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	2 cut(s)	966, 1023
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.