Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007950

Physical Location & Seq

Genomic Coordinates Reverse (-)

49809344 .. 49810390

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20289

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTTTCTGAATCCCATTTGGGGTACTTTCGATTTGGCGCAGTGCAAGCAAGATGTGAACTTGACTGTCAGTGTGGTCAGAGAGCTAATGGGCGAGCAGCTTTTGAACGGTGATAAGGCTCTCTGTGTCGGTGAAGGATCAGCCTCGGCCGTGATGGCGTTGCAAGATTTGGGGTTTCCCAATGCTCGTGGTGTTTATGAACACCGATTCTTCTCCCTCAAGCGCAAACAGTTTGGGTATGAGATTTACTATGAGGACAAGTCTTTCGATTTCGTGTTCTGCAGGGATCTAGACAAGGTTTCAGTCCCTGCTCTGCTTGTGCTCGAGATTGAGCGCGTTCTTAGCCCAGGTGGAATTAGGGCTATGCTTGTTGGTAGCAGTGGTTTGGCTCCGAATAGCCTGATTAGGTCTGCTACCCCAATTTCTTCATTGCTGAAGAGCTCCAGTGTCATGCATGTTAATTATATCAGCAATTTCACACTGGTTGTGTTCAGGAAGAGTTACGAAAATGCGGGTCTATTTGAGCAGTATCGCCTTCCGGCTAACTGCCAATCCCTCACGAACAATAGACCTTTGATCGAGAAAATGGAGCCTCTTGTGAAGGAAAAGCCAGTGAAGGACGGGAAGATGGCTACTTATTTGCCTAATTTTATTGATGTTTCCTCAAAGAAGCGGTTGGTCTATATCGATATTGGGGCAGCAGAGCACCTGAAATCAAATGTCACAGACTGGTTCCTTCCTTCTTATCCGATTACACACAGAGCTTTCCATGTCTATTTTGTTGACCACAACACTTCTGTGCTATTGTCTTATGTCAAAAAGCCGGGAATCACCTTCGTTTATCATCCAGGGCTAGCTGGAATTAAGGACAAGGACAATGTTAACATTGAAGCAGATGCAGAGCCCTATGTCTCAGATGAAGGGTTTGATTTTCTTGTTTGGTTTAAAGAAACAGTGCAGCATGCCGAGTTTGTGGTGCTGAAGATGAATGCAGGCAGTGTGGAATTGAAGTTCCTCATCCACACGAGGCCACTTCCAATTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

348

Amino Acids

39.19

Weight (kDa)

6.76

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53400
fragaria_vesca	FvH4_6g15740
malus_domestica	MD04G1099200.v1.1 MD12G1119800.v1.1
prunus_persica	Prupe.6G237600_v2.0.a1
pyrus_communis	pycom04g09410 pycom12g11870
rosa_chinensis	RchiOBHm_Chr1g0337551 RchiOBHm_Chr3g0469451 RchiOBHm_Chr7g0226531
rosa_laevigata	RLG00000024349
rosa_multiflora	Rmu_co8273143.1_g000001 Rmu_sc0005274.1_g000004 Rmu_sc0008852.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411880
rosa_rugosa	Rorug03G0101700
rosa_samantha	Rh3AG150800 Rh3BG174500 Rh3CG165500 Rh3DG200900 Rh4DG150800
rosa_wichuraiana	Rw0G023820 Rw3G014240 Rw5G022020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	336
AciI	CCGC	2 cut(s)	512, 673
AclWI	GGATC	2 cut(s)	145, 294
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	2 cut(s)	455, 1001
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	106, 890, 1009
AjnI	CCWGG	2 cut(s)	346, 847
AleI	CACNNNNGTG	1 cut(s)	797
AloI	GAACNNNNNNTCC	2 cut(s)	995, 1027
AluBI	AGCT	5 cut(s)	85, 100, 441, 764, 857
AluI	AGCT	5 cut(s)	85, 100, 441, 764, 857
Alw21I	GWGCWC	3 cut(s)	324, 443, 708
Alw26I	GTCTC	1 cut(s)	916
AlwI	GGATC	2 cut(s)	145, 294
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	147, 1028
ApeKI	GCWGC	3 cut(s)	97, 698, 958
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AspLEI	GCGC	3 cut(s)	40, 225, 336
AsuC2I	CCSGG	1 cut(s)	825
AsuHPI	GGTGA	3 cut(s)	122, 143, 823
AsuNHI	GCTAGC	1 cut(s)	853
AvaI	CYCGRG	1 cut(s)	323
BanII	GRGCYC	2 cut(s)	443, 906
BauI	CACGAG	2 cut(s)	186, 1024
Bbv12I	GWGCWC	3 cut(s)	324, 443, 708
BbvI	GCAGC	3 cut(s)	109, 710, 970
BccI	CCATC	2 cut(s)	148, 622
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	2 cut(s)	348, 849
BcnI	CCSGG	1 cut(s)	825
BcoDI	GTCTC	1 cut(s)	916
BfaI	CTAG	2 cut(s)	290, 854
BfmI	CTRYAG	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	3 cut(s)	98, 699, 959
BlsI	GCNGC	3 cut(s)	99, 700, 960
Bme1390I	CCNGG	3 cut(s)	348, 825, 849
BmeT110I	CYCGRG	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	390, 591, 734
BmrFI	CCNGG	3 cut(s)	348, 825, 849
BmsI	GCATC	1 cut(s)	886
BmtI	GCTAGC	1 cut(s)	857
BpmI	CTGGAG	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	825
Bsa29I	ATCGAT	1 cut(s)	687
BsaJI	CCNNGG	3 cut(s)	144, 346, 848
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	4 cut(s)	444, 486, 611, 734
Bse3DI	GCAATG	1 cut(s)	428
BseBI	CCWGG	2 cut(s)	348, 849
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	3 cut(s)	144, 346, 848
BseGI	GGATG	2 cut(s)	844, 1017
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	927
BseNI	ACTGG	4 cut(s)	444, 486, 611, 734
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	109, 710, 970
BsgI	GTGCAG	1 cut(s)	977
Bsh1236I	CGCG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	149, 1030
BshVI	ATCGAT	1 cut(s)	687
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	3 cut(s)	324, 443, 708
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	539, 824
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	916
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	2 cut(s)	149, 1030
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	4 cut(s)	324, 443, 708, 906
Bsp143I	GATC	3 cut(s)	137, 286, 576
BspACI	CCGC	2 cut(s)	512, 673
BspANI	GGCC	2 cut(s)	149, 1030
BspCNI	CTCAG	1 cut(s)	926
BspDI	ATCGAT	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	390, 591, 734
BspMAI	CTGCAG	1 cut(s)	284
BspOI	GCTAGC	1 cut(s)	857
BspPI	GGATC	2 cut(s)	145, 294
BspQI	GCTCTTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	428
BsrI	ACTGG	4 cut(s)	444, 486, 611, 734
BssECI	CCNNGG	3 cut(s)	144, 346, 848
BssMI	GATC	3 cut(s)	137, 286, 576
BssSI	CACGAG	2 cut(s)	186, 1024
Bst2BI	CACGAG	2 cut(s)	186, 1024
Bst2UI	CCWGG	2 cut(s)	348, 849
Bst4CI	ACNGT	4 cut(s)	67, 110, 231, 955
Bst6I	CTCTTC	2 cut(s)	431, 491
BstC8I	GCNNGC	5 cut(s)	47, 95, 855, 963, 994
BstDEI	CTNAG	2 cut(s)	341, 913
BstF5I	GGATG	2 cut(s)	844, 1017
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	40, 225, 336
BstKTI	GATC	3 cut(s)	140, 289, 579
BstMAI	GTCTC	1 cut(s)	916
BstMBI	GATC	3 cut(s)	137, 286, 576
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 155, 342
BstNI	CCWGG	2 cut(s)	348, 849
BstNSI	RCATGY	2 cut(s)	458, 965
BstSCI	CCNGG	3 cut(s)	346, 823, 847
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	109, 710, 970
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BstZI	CGGCCG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	149, 1030
BsuTUI	ATCGAT	1 cut(s)	687
BtsCI	GGATG	2 cut(s)	844, 1017
BtsI	GCAGTG	3 cut(s)	47, 385, 1003
BtsIMutI	CAGTG	8 cut(s)	47, 76, 385, 451, 479, 618, 960, 1003
Cac8I	GCNNGC	5 cut(s)	47, 95, 855, 963, 994
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	3 cut(s)	40, 225, 336
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	1 cut(s)	24
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	4 cut(s)	451, 455, 770, 962
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	2 cut(s)	341, 913
DpnI	GATC	3 cut(s)	139, 288, 578
DpnII	GATC	3 cut(s)	137, 286, 576
DraI	TTTAAA	1 cut(s)	946
EaeI	YGGCCR	1 cut(s)	147
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	431, 491
EarI	CTCTTC	2 cut(s)	431, 491
Ecl136II	GAGCTC	1 cut(s)	441
EclXI	CGGCCG	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	443, 906
Eco52I	CGGCCG	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	441
Eco57I	CTGAAG	2 cut(s)	455, 1001
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	346, 847
EcoT22I	ATGCAT	1 cut(s)	456
EcoT38I	GRGCYC	2 cut(s)	443, 906
FaeI	CATG	4 cut(s)	454, 458, 773, 965
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	4 cut(s)	450, 454, 769, 961
FauI	CCCGC	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	98, 699, 959
FokI	GGATG	2 cut(s)	831, 1004
FriOI	GRGCYC	2 cut(s)	443, 906
Fsp4HI	GCNGC	3 cut(s)	98, 699, 959
FspBI	CTAG	2 cut(s)	290, 854
GlaI	GCGC	3 cut(s)	39, 224, 335
GluI	GCNGC	3 cut(s)	98, 699, 959
GsuI	CTGGAG	1 cut(s)	427
HaeIII	GGCC	2 cut(s)	149, 1030
HapII	CCGG	2 cut(s)	539, 824
HhaI	GCGC	3 cut(s)	40, 225, 336
Hin1II	CATG	4 cut(s)	454, 458, 773, 965
Hin6I	GCGC	3 cut(s)	38, 223, 334
HinP1I	GCGC	3 cut(s)	38, 223, 334
HincII	GTYRAC	2 cut(s)	784, 883
HindII	GTYRAC	2 cut(s)	784, 883
HinfI	GANTC	3 cut(s)	10, 207, 828
HpaI	GTTAAC	1 cut(s)	883
HpaII	CCGG	2 cut(s)	539, 824
HphI	GGTGA	3 cut(s)	122, 143, 823
Hpy166II	GTNNAC	3 cut(s)	58, 784, 883
Hpy188I	TCNGA	5 cut(s)	9, 80, 393, 750, 916
Hpy188III	TCNNGA	5 cut(s)	290, 325, 493, 559, 580
Hpy8I	GTNNAC	3 cut(s)	58, 784, 883
HpyAV	CCTTC	8 cut(s)	128, 545, 595, 610, 746, 750, 844, 914
HpyCH4III	ACNGT	4 cut(s)	67, 110, 231, 955
HpyCH4V	TGCA	7 cut(s)	45, 163, 282, 454, 899, 958, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 155, 342
HpyF3I	CTNAG	2 cut(s)	341, 913
Hsp92II	CATG	4 cut(s)	454, 458, 773, 965
HspAI	GCGC	3 cut(s)	38, 223, 334
KspAI	GTTAAC	1 cut(s)	883
Kzo9I	GATC	3 cut(s)	137, 286, 576
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	3 cut(s)	394, 446, 589
Lsp1109I	GCAGC	3 cut(s)	109, 710, 970
LweI	GCATC	1 cut(s)	886
MaeI	CTAG	2 cut(s)	290, 854
MaeIII	GTNAC	2 cut(s)	500, 721
MalI	GATC	3 cut(s)	139, 288, 578
MboI	GATC	3 cut(s)	137, 286, 576
MboII	GAAGA	6 cut(s)	202, 417, 448, 508, 637, 994
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	4 cut(s)	324, 443, 708, 906
MluCI	AATT	8 cut(s)	354, 420, 460, 472, 646, 861, 1004, 1038
MnlI	CCTC	8 cut(s)	154, 227, 247, 566, 603, 673, 1020, 1025
Mph1103I	ATGCAT	1 cut(s)	456
MseI	TTAA	4 cut(s)	459, 864, 882, 945
MslI	CAYNNNNRTG	1 cut(s)	797
MspI	CCGG	2 cut(s)	539, 824
MspR9I	CCNGG	3 cut(s)	348, 825, 849
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	2 cut(s)	348, 849
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	46, 155, 342
NciI	CCSGG	1 cut(s)	825
NdeII	GATC	3 cut(s)	137, 286, 576
NheI	GCTAGC	1 cut(s)	853
NlaIII	CATG	4 cut(s)	454, 458, 773, 965
NlaIV	GGNNCC	3 cut(s)	390, 591, 734
NmeAIII	GCCGAG	2 cut(s)	125, 991
NmuCI	GTSAC	1 cut(s)	721
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	2 cut(s)	458, 965
OliI	CACNNNNGTG	1 cut(s)	797
PaeI	GCATGC	1 cut(s)	965
PaeR7I	CTCGAG	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	431
PctI	GAATGC	1 cut(s)	994
PfeI	GAWTC	3 cut(s)	10, 207, 828
PkrI	GCNGC	3 cut(s)	99, 700, 960
Psp124BI	GAGCTC	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	346, 847
PspGI	CCWGG	2 cut(s)	346, 847
PspN4I	GGNNCC	3 cut(s)	390, 591, 734
PstI	CTGCAG	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	797
SacI	GAGCTC	1 cut(s)	443
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	4 cut(s)	459, 864, 882, 945
SatI	GCNGC	3 cut(s)	98, 699, 959
Sau3AI	GATC	3 cut(s)	137, 286, 576
ScrFI	CCNGG	3 cut(s)	348, 825, 849
SduI	GDGCHC	4 cut(s)	324, 443, 708, 906
SfaNI	GCATC	1 cut(s)	886
SfcI	CTRYAG	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	2 cut(s)	218, 323
SmoI	CTYRAG	2 cut(s)	218, 323
SphI	GCATGC	1 cut(s)	965
Sse9I	AATT	8 cut(s)	354, 420, 460, 472, 646, 861, 1004, 1038
SsiI	CCGC	2 cut(s)	512, 673
SspMI	CTAG	2 cut(s)	290, 854
SstI	GAGCTC	1 cut(s)	443
StyD4I	CCNGG	3 cut(s)	346, 823, 847
TaaI	ACNGT	4 cut(s)	67, 110, 231, 955
TaqI	TCGA	5 cut(s)	30, 267, 324, 579, 687
TasI	AATT	8 cut(s)	354, 420, 460, 472, 646, 861, 1004, 1038
TfiI	GAWTC	3 cut(s)	10, 207, 828
Tru1I	TTAA	4 cut(s)	459, 864, 882, 945
Tru9I	TTAA	4 cut(s)	459, 864, 882, 945
TscAI	CASTG	8 cut(s)	47, 76, 385, 451, 486, 618, 960, 1003
TseFI	GTSAC	1 cut(s)	721
TseI	GCWGC	3 cut(s)	97, 698, 958
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	4 cut(s)	213, 417, 933, 1001
TspRI	CASTG	8 cut(s)	47, 76, 385, 451, 486, 618, 960, 1003
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	2 cut(s)	458, 965
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	2 cut(s)	290, 854
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.