RchiOBHm_Chr1g0337551

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007950
Physical Location & Seq
Forward (+)
29395361 .. 29396487
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56544

Sequence Viewer

Length: 960 bp
ATGGGCGAGCAGCTTTTGAACGGTGATAAGGCTCTCTGTGTCAGTGAAGGATCGGCCTCGGCCGTGATGGCGTTGCAAGATTTGGGGTTTCCCAATGCTCGTGGTGTTTATGAACACCGATTCTTCTCCCTCAAGCGCAAACAGTTTGGGTATGAGATTTACTATGAGGACAAGTCTTTCGATTTCGTGTTCTGCAGGGATCTAGACAAGGTTTCAGTCCCTGCTCTGCTTGTGCTCGAGATTGAGCGCGTTCTTAGCCCAGGTGGAATTGGGGCTATGCTTGTTGGTAGCAGTGGTTTGGCTCCGAATAGCCTGATTAGGTCTGCTACCCCAATTTCTTCATTGCTGAAGAGCTCCAGTGTCGTGCATGTTAATTATATCAGCAATTTCACACTGGTTGTGTTCAGGAAGAGTTACGAAAATGCGGGTCTATTTGAGCAGTATCGCCTTCCGGCTGACTGCCAATCCCTCACGAACAATAGACCTTTGATCGAGAAAATGGAGCCTCTTGTGAAGGAAAAGCCAGTGGAGGACGGGAAGATGGCTACTTATTTGCCTAATTTTATTGATGTTTCCTCAAAGAAGCGGTTGGTCTATATCGATATTGGGGCAGCAGAGCACCTGAAATCAAATGTCACAGACTGGTTCCTGCCTTCTTATCCGATTACACACAGAGCTTTCCATGTCTATTTTGTTGACCACAACACTTCTGTGCTATTGTCTTATGTCAAAAAGCCGGGAATCACCTTCGTTTATCATCCAGGGCTGGCTGGAATTAAGGACAAGGACAATGTTAACATTGAAGCAGATGCAGAGCCCTATGTCGCAGATGAAGGGTTTGATTTTCTTGTTTGGTTTAAAGAAACAGTGCAGCATGCCGAGTTTGTGGTGCTGAAGATGAATGCAGGCAGTGTGGAATTGAAGTTCCTCATCCACACGAGGCCACTTCCAATTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

319

Amino Acids

35.75

Weight (kDa)

6.15

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7870 PF25276 177 - 306 2.9e-06 Domain of unknown function (DUF7870)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 249
AciI CCGC 2 cut(s) 425, 586
AclWI GGATC 2 cut(s) 58, 207
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 368, 914
AgsI TTSAA 3 cut(s) 19, 803, 922
AjnI CCWGG 2 cut(s) 259, 760
AleI CACNNNNGTG 1 cut(s) 710
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 3 cut(s) 13, 354, 677
AluI AGCT 3 cut(s) 13, 354, 677
Alw21I GWGCWC 3 cut(s) 237, 356, 621
AlwI GGATC 2 cut(s) 58, 207
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 54, 60, 941
ApeKI GCWGC 3 cut(s) 10, 611, 871
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 2 cut(s) 138, 249
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 2 cut(s) 35, 736
AvaI CYCGRG 1 cut(s) 236
BanII GRGCYC 2 cut(s) 356, 819
BauI CACGAG 2 cut(s) 99, 937
Bbv12I GWGCWC 3 cut(s) 237, 356, 621
BbvI GCAGC 3 cut(s) 22, 623, 883
BccI CCATC 2 cut(s) 61, 535
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 261, 762
BcnI CCSGG 1 cut(s) 738
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 193
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 3 cut(s) 11, 612, 872
BlsI GCNGC 3 cut(s) 12, 613, 873
Bme1390I CCNGG 3 cut(s) 261, 738, 762
BmeT110I CYCGRG 1 cut(s) 236
BmiI GGNNCC 3 cut(s) 303, 504, 647
BmrFI CCNGG 3 cut(s) 261, 738, 762
BmsI GCATC 1 cut(s) 799
BpmI CTGGAG 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 738
Bsa29I ATCGAT 1 cut(s) 600
BsaJI CCNNGG 3 cut(s) 57, 259, 761
Bse1I ACTGG 4 cut(s) 357, 399, 524, 647
Bse3DI GCAATG 1 cut(s) 341
BseBI CCWGG 2 cut(s) 261, 762
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 3 cut(s) 57, 259, 761
BseGI GGATG 2 cut(s) 757, 930
BseMI GCAATG 1 cut(s) 341
BseNI ACTGG 4 cut(s) 357, 399, 524, 647
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 3 cut(s) 22, 623, 883
BsgI GTGCAG 1 cut(s) 890
Bsh1236I CGCG 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 56, 62, 943
BshVI ATCGAT 1 cut(s) 600
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 3 cut(s) 237, 356, 621
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 452, 737
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 3 cut(s) 56, 62, 943
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 4 cut(s) 237, 356, 621, 819
Bsp143I GATC 3 cut(s) 50, 199, 489
BspACI CCGC 2 cut(s) 425, 586
BspANI GGCC 3 cut(s) 56, 62, 943
BspDI ATCGAT 1 cut(s) 600
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 303, 504, 647
BspMAI CTGCAG 1 cut(s) 197
BspPI GGATC 2 cut(s) 58, 207
BspQI GCTCTTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 4 cut(s) 357, 399, 524, 647
BssECI CCNNGG 3 cut(s) 57, 259, 761
BssMI GATC 3 cut(s) 50, 199, 489
BssSI CACGAG 2 cut(s) 99, 937
Bst2BI CACGAG 2 cut(s) 99, 937
Bst2UI CCWGG 2 cut(s) 261, 762
Bst4CI ACNGT 3 cut(s) 23, 144, 868
Bst6I CTCTTC 2 cut(s) 344, 404
BstC8I GCNNGC 4 cut(s) 8, 768, 876, 907
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 757, 930
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 2 cut(s) 138, 249
BstKTI GATC 3 cut(s) 53, 202, 492
BstMBI GATC 3 cut(s) 50, 199, 489
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 68, 255
BstNI CCWGG 2 cut(s) 261, 762
BstNSI RCATGY 2 cut(s) 371, 878
BstSCI CCNGG 3 cut(s) 259, 736, 760
BstSFI CTRYAG 1 cut(s) 193
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 22, 623, 883
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BstZI CGGCCG 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 600
BsuRI GGCC 3 cut(s) 56, 62, 943
BsuTUI ATCGAT 1 cut(s) 600
BtsCI GGATG 2 cut(s) 757, 930
BtsI GCAGTG 2 cut(s) 298, 916
BtsIMutI CAGTG 7 cut(s) 49, 298, 364, 392, 531, 873, 916
Cac8I GCNNGC 4 cut(s) 8, 768, 876, 907
CaiI CAGNNNCTG 1 cut(s) 221
CfoI GCGC 2 cut(s) 138, 249
ClaI ATCGAT 1 cut(s) 600
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 3 cut(s) 368, 683, 875
DdeI CTNAG 1 cut(s) 254
DpnI GATC 3 cut(s) 52, 201, 491
DpnII GATC 3 cut(s) 50, 199, 489
DraI TTTAAA 1 cut(s) 859
EaeI YGGCCR 1 cut(s) 60
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 344, 404
EarI CTCTTC 2 cut(s) 344, 404
Ecl136II GAGCTC 1 cut(s) 354
EclXI CGGCCG 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 356, 819
Eco52I CGGCCG 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 2 cut(s) 368, 914
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 354
EcoRII CCWGG 2 cut(s) 259, 760
EcoT38I GRGCYC 2 cut(s) 356, 819
FaeI CATG 3 cut(s) 371, 686, 878
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 367, 682, 874
FauI CCCGC 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 11, 612, 872
FokI GGATG 2 cut(s) 744, 917
FriOI GRGCYC 2 cut(s) 356, 819
Fsp4HI GCNGC 3 cut(s) 11, 612, 872
FspBI CTAG 1 cut(s) 203
GlaI GCGC 2 cut(s) 137, 248
GluI GCNGC 3 cut(s) 11, 612, 872
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 3 cut(s) 56, 62, 943
HapII CCGG 2 cut(s) 452, 737
HhaI GCGC 2 cut(s) 138, 249
Hin1II CATG 3 cut(s) 371, 686, 878
Hin6I GCGC 2 cut(s) 136, 247
HinP1I GCGC 2 cut(s) 136, 247
HincII GTYRAC 2 cut(s) 697, 796
HindII GTYRAC 2 cut(s) 697, 796
HinfI GANTC 2 cut(s) 120, 741
HpaI GTTAAC 1 cut(s) 796
HpaII CCGG 2 cut(s) 452, 737
HphI GGTGA 2 cut(s) 35, 736
Hpy166II GTNNAC 2 cut(s) 697, 796
Hpy188I TCNGA 2 cut(s) 306, 663
Hpy188III TCNNGA 5 cut(s) 203, 238, 406, 472, 493
Hpy8I GTNNAC 2 cut(s) 697, 796
HpyAV CCTTC 6 cut(s) 41, 458, 508, 663, 757, 827
HpyCH4III ACNGT 3 cut(s) 23, 144, 868
HpyCH4V TGCA 6 cut(s) 76, 195, 367, 812, 871, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 255
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 3 cut(s) 371, 686, 878
HspAI GCGC 2 cut(s) 136, 247
KspAI GTTAAC 1 cut(s) 796
Kzo9I GATC 3 cut(s) 50, 199, 489
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 3 cut(s) 307, 359, 502
Lsp1109I GCAGC 3 cut(s) 22, 623, 883
LweI GCATC 1 cut(s) 799
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 413, 634
MalI GATC 3 cut(s) 52, 201, 491
MboI GATC 3 cut(s) 50, 199, 489
MboII GAAGA 6 cut(s) 115, 330, 361, 421, 550, 907
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 4 cut(s) 237, 356, 621, 819
MluCI AATT 8 cut(s) 267, 333, 373, 385, 559, 774, 917, 951
MnlI CCTC 9 cut(s) 67, 140, 160, 479, 516, 523, 586, 933, 938
MseI TTAA 4 cut(s) 372, 777, 795, 858
MslI CAYNNNNRTG 1 cut(s) 710
MspI CCGG 2 cut(s) 452, 737
MspR9I CCNGG 3 cut(s) 261, 738, 762
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 2 cut(s) 261, 762
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 68, 255
NciI CCSGG 1 cut(s) 738
NdeII GATC 3 cut(s) 50, 199, 489
NlaIII CATG 3 cut(s) 371, 686, 878
NlaIV GGNNCC 3 cut(s) 303, 504, 647
NmeAIII GCCGAG 2 cut(s) 38, 904
NmuCI GTSAC 1 cut(s) 634
NspI RCATGY 2 cut(s) 371, 878
OliI CACNNNNGTG 1 cut(s) 710
PaeI GCATGC 1 cut(s) 878
PaeR7I CTCGAG 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 344
PctI GAATGC 1 cut(s) 907
PfeI GAWTC 2 cut(s) 120, 741
PkrI GCNGC 3 cut(s) 12, 613, 873
Psp124BI GAGCTC 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 259, 760
PspGI CCWGG 2 cut(s) 259, 760
PspN4I GGNNCC 3 cut(s) 303, 504, 647
PstI CTGCAG 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 710
SacI GAGCTC 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 4 cut(s) 372, 777, 795, 858
SatI GCNGC 3 cut(s) 11, 612, 872
Sau3AI GATC 3 cut(s) 50, 199, 489
ScrFI CCNGG 3 cut(s) 261, 738, 762
SduI GDGCHC 4 cut(s) 237, 356, 621, 819
SetI ASST 9 cut(s) 15, 213, 265, 323, 356, 487, 624, 679, 749
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 2 cut(s) 131, 236
SmoI CTYRAG 2 cut(s) 131, 236
SphI GCATGC 1 cut(s) 878
Sse9I AATT 8 cut(s) 267, 333, 373, 385, 559, 774, 917, 951
SsiI CCGC 2 cut(s) 425, 586
SspMI CTAG 1 cut(s) 203
SstI GAGCTC 1 cut(s) 356
StyD4I CCNGG 3 cut(s) 259, 736, 760
TaaI ACNGT 3 cut(s) 23, 144, 868
TaqI TCGA 4 cut(s) 180, 237, 492, 600
TasI AATT 8 cut(s) 267, 333, 373, 385, 559, 774, 917, 951
TfiI GAWTC 2 cut(s) 120, 741
Tru1I TTAA 4 cut(s) 372, 777, 795, 858
Tru9I TTAA 4 cut(s) 372, 777, 795, 858
TscAI CASTG 7 cut(s) 49, 298, 364, 399, 531, 873, 916
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 3 cut(s) 10, 611, 871
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 4 cut(s) 126, 330, 846, 914
TspRI CASTG 7 cut(s) 49, 298, 364, 399, 531, 873, 916
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 2 cut(s) 371, 878
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.