Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007950

Physical Location & Seq

Genomic Coordinates Reverse (-)

14298913 .. 14299761

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCTTGTGGGTAGCAGTGTTTCCTCCCCGAAGAGCTTGATTGGGTCTGCTACCCCAATTTCTTCACTGCTGAAAAGTTCCAGTGTTGTGCACGTTAATTACGTCAATAACTTCACACTGGTTGTGTTCAAGAAAAATTATGACAATGCCGGGCTCTTTAAGCAGTATCACCTTCCAGCTGACTGCCCATCGCTCACAAACAATCGACCTTTCATTGGGAAAATGGAGCCTCTGGTGAAGGAAAAACCAGTGGAGTATGGAAAGAGGTTTGCGTACTTACCTAATTTTGTTGATGTTTCCTCAAAGAGGCGGTTGGTCTATATTGATATTGGGGCAGCAGCGCATCTGAACGCAAATGTTACAAATTGGTTCCTGCCTTCTTATCCCATCGAACGCAAAGATTTCAATGTTTATTTTGTTGACCATAACACTTCTGTTCTGTTATCCTACGTCAAAAAGCCCGGAATCACCTTTGTTTATCATCCAGGGCTGGCCGGAATCAATCCGCAAGTCAATGTTCCAAATGATGGGATCACAGATCCATATGTCGGAGATGAAGGGTTTGATTTCCTCGTTTGGTTCAAAGAAACTGTGGGGTTTGCAGATTTCGTGGTGCTCAAGATGAATGCAGGCAATGTAGAACTGAAGTTCCTCACGGAACTGTTTGAAAGTGGAGCCATATGCTTTGTGGACGAGCTGTTTCTTCACTGCTCAGGCCAAGTAGAAGCTGGAGGTGAAATGCCGGTGGACTGCATGGACATCTTTGGAAGCCTGCGTAGCAGTGGAGTGTTTGTCCATCAGTGGTGGGGGGACGGCAACCCCGGTGACGTTCTCCTATCTGTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

283

Amino Acids

31.15

Weight (kDa)

5.62

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7870	PF25276	81 - 144	2.7e-06	Domain of unknown function (DUF7870)
DUF7870	PF25276	192 - 269	2.7e-14	Domain of unknown function (DUF7870)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53400
fragaria_vesca	FvH4_6g15740
malus_domestica	MD04G1099200.v1.1 MD12G1119800.v1.1
prunus_persica	Prupe.6G237600_v2.0.a1
pyrus_communis	pycom04g09410 pycom12g11870
rosa_chinensis	RchiOBHm_Chr1g0337551 RchiOBHm_Chr3g0469451 RchiOBHm_Chr7g0226531
rosa_laevigata	RLG00000024349
rosa_multiflora	Rmu_co8273143.1_g000001 Rmu_sc0005274.1_g000004 Rmu_sc0008852.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411880
rosa_rugosa	Rorug03G0101700
rosa_samantha	Rh3AG150800 Rh3BG174500 Rh3CG165500 Rh3DG200900 Rh4DG150800
rosa_wichuraiana	Rw0G023820 Rw3G014240 Rw5G022020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	527
AciI	CCGC	2 cut(s)	310, 506
AclWI	GGATC	2 cut(s)	533, 539
AcoI	YGGCCR	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	665
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	4 cut(s)	215, 306, 527, 548
AgsI	TTSAA	4 cut(s)	130, 406, 583, 668
AjnI	CCWGG	1 cut(s)	484
AloI	GAACNNNNNNTCC	2 cut(s)	633, 665
AluBI	AGCT	4 cut(s)	36, 179, 697, 728
AluI	AGCT	4 cut(s)	36, 179, 697, 728
Alw21I	GWGCWC	2 cut(s)	93, 618
Alw44I	GTGCAC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	533, 539
AoxI	GGCC	2 cut(s)	492, 715
ApaLI	GTGCAC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	335, 338
AspLEI	GCGC	1 cut(s)	343
AsuC2I	CCSGG	3 cut(s)	151, 462, 822
AsuHPI	GGTGA	5 cut(s)	161, 247, 460, 746, 836
BaeGI	GKGCMC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	93, 618
BbvI	GCAGC	2 cut(s)	347, 350
BccI	CCATC	4 cut(s)	196, 395, 521, 804
BceAI	ACGGC	1 cut(s)	829
BciT130I	CCWGG	1 cut(s)	486
BcnI	CCSGG	3 cut(s)	151, 462, 822
BisI	GCNGC	2 cut(s)	336, 339
BlsI	GCNGC	2 cut(s)	337, 340
Bme1390I	CCNGG	4 cut(s)	151, 462, 486, 822
BmiI	GGNNCC	3 cut(s)	228, 371, 676
BmrFI	CCNGG	4 cut(s)	151, 462, 486, 822
BmsI	GCATC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	3 cut(s)	151, 462, 822
BsaJI	CCNNGG	2 cut(s)	485, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bsc4I	CCNNNNNNNGG	4 cut(s)	215, 306, 527, 548
Bse118I	RCCGGY	1 cut(s)	742
Bse1I	ACTGG	3 cut(s)	81, 123, 248
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	485, 820
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	4 cut(s)	215, 306, 527, 548
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	3 cut(s)	81, 123, 248
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	347, 350
BshFI	GGCC	2 cut(s)	494, 717
BsiHKAI	GWGCWC	2 cut(s)	93, 618
BsiSI	CCGG	5 cut(s)	150, 462, 495, 743, 822
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	4 cut(s)	215, 306, 527, 548
BsmFI	GGGAC	1 cut(s)	824
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	2 cut(s)	494, 717
Bsp1286I	GDGCHC	3 cut(s)	93, 156, 618
Bsp143I	GATC	2 cut(s)	531, 538
BspACI	CCGC	2 cut(s)	310, 506
BspANI	GGCC	2 cut(s)	494, 717
BspCNI	CTCAG	1 cut(s)	725
BspLI	GGNNCC	3 cut(s)	228, 371, 676
BspPI	GGATC	2 cut(s)	533, 539
BspQI	GCTCTTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	640
BsrFI	RCCGGY	1 cut(s)	742
BsrI	ACTGG	3 cut(s)	81, 123, 248
BssAI	RCCGGY	1 cut(s)	742
BssECI	CCNNGG	2 cut(s)	485, 820
BssMI	GATC	2 cut(s)	531, 538
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	592, 663
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	492, 631, 773
BstDEI	CTNAG	1 cut(s)	712
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	2 cut(s)	534, 541
BstMBI	GATC	2 cut(s)	531, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 777
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	4 cut(s)	149, 460, 484, 820
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	347, 350
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	494, 717
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	4 cut(s)	22, 65, 706, 787
BtsIMutI	CAGTG	8 cut(s)	22, 65, 88, 116, 255, 706, 787, 806
Cac8I	GCNNGC	3 cut(s)	492, 631, 773
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	742
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	754
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	712
DpnI	GATC	2 cut(s)	533, 540
DpnII	GATC	2 cut(s)	531, 538
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	665
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	757
FaiI	YATR	9 cut(s)	141, 258, 321, 426, 544, 546, 680, 682, 755
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	1 cut(s)	753
FauNDI	CATATG	2 cut(s)	544, 680
Fnu4HI	GCNGC	2 cut(s)	336, 339
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	336, 339
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	336, 339
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	494, 717
HapII	CCGG	5 cut(s)	150, 462, 495, 743, 822
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	1 cut(s)	757
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	465, 498
HpaII	CCGG	5 cut(s)	150, 462, 495, 743, 822
HphI	GGTGA	5 cut(s)	161, 247, 460, 746, 836
Hpy166II	GTNNAC	4 cut(s)	91, 421, 691, 748
Hpy188I	TCNGA	2 cut(s)	348, 551
Hpy188III	TCNNGA	2 cut(s)	130, 619
Hpy8I	GTNNAC	4 cut(s)	91, 421, 691, 748
HpyAV	CCTTC	4 cut(s)	182, 232, 387, 551
HpyCH4III	ACNGT	2 cut(s)	592, 663
HpyCH4IV	ACGT	4 cut(s)	93, 102, 450, 828
HpyCH4V	TGCA	4 cut(s)	91, 602, 629, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 777
HpyF3I	CTNAG	1 cut(s)	712
HpySE526I	ACGT	4 cut(s)	93, 102, 450, 828
Hsp92II	CATG	1 cut(s)	757
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	2 cut(s)	531, 538
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	226, 674
Lsp1109I	GCAGC	2 cut(s)	347, 350
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	4 cut(s)	93, 102, 450, 828
MaeIII	GTNAC	2 cut(s)	358, 824
MalI	GATC	2 cut(s)	533, 540
MboI	GATC	2 cut(s)	531, 538
MboII	GAAGA	3 cut(s)	43, 54, 695
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	3 cut(s)	93, 156, 618
MluCI	AATT	5 cut(s)	57, 97, 136, 283, 364
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	8 cut(s)	34, 240, 258, 300, 310, 581, 662, 725
MseI	TTAA	2 cut(s)	96, 159
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	5 cut(s)	150, 462, 495, 743, 822
MspR9I	CCNGG	4 cut(s)	151, 462, 486, 822
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	160, 777
NciI	CCSGG	3 cut(s)	151, 462, 822
NdeI	CATATG	2 cut(s)	544, 680
NdeII	GATC	2 cut(s)	531, 538
NlaIII	CATG	1 cut(s)	757
NlaIV	GGNNCC	3 cut(s)	228, 371, 676
NmuCI	GTSAC	1 cut(s)	824
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	2 cut(s)	465, 498
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	337, 340
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	3 cut(s)	228, 371, 676
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	96, 159
SatI	GCNGC	2 cut(s)	336, 339
Sau3AI	GATC	2 cut(s)	531, 538
ScrFI	CCNGG	4 cut(s)	151, 462, 486, 822
SduI	GDGCHC	3 cut(s)	93, 156, 618
SfaNI	GCATC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	5 cut(s)	57, 97, 136, 283, 364
SsiI	CCGC	2 cut(s)	310, 506
StyD4I	CCNGG	4 cut(s)	149, 460, 484, 820
TaaI	ACNGT	2 cut(s)	592, 663
TaiI	ACGT	4 cut(s)	96, 105, 453, 831
TaqI	TCGA	2 cut(s)	205, 390
TasI	AATT	5 cut(s)	57, 97, 136, 283, 364
TfiI	GAWTC	2 cut(s)	465, 498
Tru1I	TTAA	2 cut(s)	96, 159
Tru9I	TTAA	2 cut(s)	96, 159
TscAI	CASTG	8 cut(s)	22, 72, 88, 123, 255, 713, 787, 806
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	2 cut(s)	335, 338
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	3 cut(s)	202, 570, 638
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	8 cut(s)	22, 72, 88, 123, 255, 713, 787, 806
Van91I	CCANNNNNTGG	1 cut(s)	527
VneI	GTGCAC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	2 cut(s)	685, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.