Rh4DG150800

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007950
Physical Location & Seq
Reverse (-)
30107805 .. 30121608
13804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG150800.1

Sequence Viewer

Length: 1098 bp
ATGGCGTTGCAATATTTGGGGTTTCCCAATGCTCATGGTGTTTATGAACACCGATTCTTCTCCCTCAAGCGCAAACAGTTTGGGTATGAGATTTACTATGAGGACAAGTCTTTCGATTTCGTGTTCTGCAGGGATCTAGACAAGGTTTCAGTCCCTGCTCTGCTTGTGCTCGAGATTGAGCGTGTTCTTAGCCCAGGTGGAATTGGGGCTATGCTTGTTGGTAGCAGTGGTTTGGCTCCGAATAGCCTGATTAGGTCTGCTACCCCAATTTCTTCATTGCTGAAGAGCTCCAGTGTCGTGCATGTTAATTATATCAGCAATTTCACACTGGTTGTGTTCAGGAAGAGTTACGAAAATGCGGGTCTATTTGAGCAGTATCGCCTTCCGGCTGACTGCCAATCCCTCACGAACAATAGACCTTTGATCGTGAAGGAAAAGCCAGTGGAGGACGGGAAGATGGCTACTTATTTGCCTAATTTTATTGATGTTTCCTCAAAGAAGCGGTTGGTCTATATCGATATTGGGGCAGCAGAGCACCTGAAATCAAATGTCACAGACTGGTTCCTGCCTTCTTATCCGATTACACACAGAGCTTTCCATGTATATTTTGTTGACCACAACACTTCTGTGCTATTGTCTTATGTCAAAAAGCAGGGAATCACCTTCGTTTATCATCCACGGCTGGCTCGAATTAAGGACAAGGACAATGTTAACATTGAAGCAGATGCAGAGCCCTATGTCACAGATGAAGGGTTTGATTTTCTTGTTTGGTTTAAAGAAACAGTGCAGCATGCCGAGTTTGTGGTGCTGAAGATGAATGCAGGCAGTGTGGAATTGAAGTGCCCTATTGCTTCATTTGATTTGGATCGTCAAGTATCGAATAAGTTATTGTTTCCTTGGAATTTAAGCCACAACCTTATTAAAGGAAGCAAAATTCATAAGACATATAAAGCTGGCTTTTGGGAATCGATTAAATCTGGGTTACAGAGAAGAAACGAAGAAAAAAAAAAAACAATGGTAATGAGTTTCGTTTCTCTTAAAAAAATGAAAGGAGATTTCTGTTCTTGGTCTTGGAATTTTTATTTTTTTGTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

365

Amino Acids

41.92

Weight (kDa)

9.13

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7870 PF25276 149 - 244 6.5e-06 Domain of unknown function (DUF7870)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 359, 502
AclWI GGATC 2 cut(s) 141, 873
AcsI RAATTY 3 cut(s) 901, 933, 1075
AcuI CTGAAG 2 cut(s) 302, 830
AgsI TTSAA 2 cut(s) 719, 838
AjnI CCWGG 1 cut(s) 193
AleI CACNNNNGTG 1 cut(s) 626
AluBI AGCT 3 cut(s) 288, 593, 953
AluI AGCT 3 cut(s) 288, 593, 953
Alw21I GWGCWC 3 cut(s) 171, 290, 537
AlwI GGATC 2 cut(s) 141, 873
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 527, 787
ApoI RAATTY 3 cut(s) 901, 933, 1075
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 652
AvaI CYCGRG 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 845
BanII GRGCYC 2 cut(s) 290, 735
Bbv12I GWGCWC 3 cut(s) 171, 290, 537
BbvI GCAGC 2 cut(s) 539, 799
BccI CCATC 1 cut(s) 451
BceAI ACGGC 1 cut(s) 695
BciT130I CCWGG 1 cut(s) 195
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 127
BisI GCNGC 2 cut(s) 528, 788
BlsI GCNGC 2 cut(s) 529, 789
Bme1390I CCNGG 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 237, 563
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 715
BpmI CTGGAG 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 50
Bsa29I ATCGAT 2 cut(s) 516, 968
BsaBI GATNNNNATC 1 cut(s) 864
BsaJI CCNNGG 3 cut(s) 193, 677, 896
Bse1I ACTGG 4 cut(s) 291, 333, 440, 563
Bse3DI GCAATG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 864
BseBI CCWGG 1 cut(s) 195
BseCI ATCGAT 2 cut(s) 516, 968
BseDI CCNNGG 3 cut(s) 193, 677, 896
BseGI GGATG 1 cut(s) 673
BseJI GATNNNNATC 1 cut(s) 864
BseMI GCAATG 1 cut(s) 275
BseNI ACTGG 4 cut(s) 291, 333, 440, 563
BseSI GKGCMC 1 cut(s) 845
BseXI GCAGC 2 cut(s) 539, 799
BsgI GTGCAG 1 cut(s) 806
BshVI ATCGAT 2 cut(s) 516, 968
BsiHKAI GWGCWC 3 cut(s) 171, 290, 537
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 386
BslFI GGGAC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 823
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 5 cut(s) 171, 290, 537, 735, 845
Bsp143I GATC 3 cut(s) 133, 423, 865
BspACI CCGC 2 cut(s) 359, 502
BspDI ATCGAT 2 cut(s) 516, 968
BspLI GGNNCC 2 cut(s) 237, 563
BspMAI CTGCAG 1 cut(s) 131
BspPI GGATC 2 cut(s) 141, 873
BspQI GCTCTTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 4 cut(s) 291, 333, 440, 563
BssECI CCNNGG 3 cut(s) 193, 677, 896
BssMI GATC 3 cut(s) 133, 423, 865
BssT1I CCWWGG 1 cut(s) 896
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 78, 784
Bst6I CTCTTC 2 cut(s) 278, 338
BstC8I GCNNGC 4 cut(s) 684, 792, 823, 955
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 677
BstF5I GGATG 1 cut(s) 673
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 136, 426, 868
BstMBI GATC 3 cut(s) 133, 423, 865
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 2 cut(s) 305, 794
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 845
BstV1I GCAGC 2 cut(s) 539, 799
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Bsu15I ATCGAT 2 cut(s) 516, 968
BsuTUI ATCGAT 2 cut(s) 516, 968
BtgI CCRYGG 1 cut(s) 677
BtsCI GGATG 1 cut(s) 673
BtsI GCAGTG 2 cut(s) 232, 832
BtsIMutI CAGTG 6 cut(s) 232, 298, 326, 447, 789, 832
Cac8I GCNNGC 4 cut(s) 684, 792, 823, 955
CaiI CAGNNNCTG 1 cut(s) 155
CfoI GCGC 1 cut(s) 72
ClaI ATCGAT 2 cut(s) 516, 968
CviAII CATG 4 cut(s) 35, 302, 599, 791
DdeI CTNAG 1 cut(s) 188
DpnI GATC 3 cut(s) 135, 425, 867
DpnII GATC 3 cut(s) 133, 423, 865
DraI TTTAAA 1 cut(s) 775
Eam1104I CTCTTC 2 cut(s) 278, 338
EarI CTCTTC 2 cut(s) 278, 338
Ecl136II GAGCTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 896
Eco24I GRGCYC 2 cut(s) 290, 735
Eco53kI GAGCTC 1 cut(s) 288
Eco57I CTGAAG 2 cut(s) 302, 830
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 896
EcoT38I GRGCYC 2 cut(s) 290, 735
ErhI CCWWGG 1 cut(s) 896
FaeI CATG 4 cut(s) 38, 305, 602, 794
FaqI GGGAC 1 cut(s) 137
FatI CATG 4 cut(s) 34, 301, 598, 790
FauI CCCGC 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 528, 788
FokI GGATG 1 cut(s) 660
FriOI GRGCYC 2 cut(s) 290, 735
Fsp4HI GCNGC 2 cut(s) 528, 788
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 528, 788
GsuI CTGGAG 1 cut(s) 274
HapII CCGG 1 cut(s) 386
HhaI GCGC 1 cut(s) 72
Hin1II CATG 4 cut(s) 38, 305, 602, 794
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 2 cut(s) 613, 712
HindII GTYRAC 2 cut(s) 613, 712
HinfI GANTC 3 cut(s) 54, 657, 965
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 1 cut(s) 386
HphI GGTGA 1 cut(s) 652
Hpy166II GTNNAC 2 cut(s) 613, 712
Hpy188I TCNGA 2 cut(s) 240, 579
Hpy188III TCNNGA 5 cut(s) 137, 172, 340, 406, 427
Hpy8I GTNNAC 2 cut(s) 613, 712
HpyAV CCTTC 5 cut(s) 392, 424, 579, 673, 743
HpyCH4III ACNGT 2 cut(s) 78, 784
HpyCH4V TGCA 6 cut(s) 10, 129, 301, 728, 787, 821
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 4 cut(s) 38, 305, 602, 794
HspAI GCGC 1 cut(s) 70
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 3 cut(s) 133, 423, 865
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 2 cut(s) 241, 293
Lsp1109I GCAGC 2 cut(s) 539, 799
LweI GCATC 1 cut(s) 715
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 4 cut(s) 347, 550, 739, 981
MalI GATC 3 cut(s) 135, 425, 867
MboI GATC 3 cut(s) 133, 423, 865
MboII GAAGA 8 cut(s) 49, 264, 295, 355, 466, 823, 1002, 1010
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 5 cut(s) 171, 290, 537, 735, 845
MnlI CCTC 5 cut(s) 74, 94, 413, 439, 502
MseI TTAA 8 cut(s) 306, 693, 711, 774, 905, 921, 972, 1038
MslI CAYNNNNRTG 1 cut(s) 626
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 823
MvaI CCWGG 1 cut(s) 195
NdeII GATC 3 cut(s) 133, 423, 865
NlaIII CATG 4 cut(s) 38, 305, 602, 794
NlaIV GGNNCC 2 cut(s) 237, 563
NmeAIII GCCGAG 1 cut(s) 820
NmuCI GTSAC 2 cut(s) 550, 739
NspI RCATGY 2 cut(s) 305, 794
OliI CACNNNNGTG 1 cut(s) 626
PaeI GCATGC 1 cut(s) 794
PaeR7I CTCGAG 1 cut(s) 170
PciSI GCTCTTC 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 685
PctI GAATGC 1 cut(s) 823
PfeI GAWTC 3 cut(s) 54, 657, 965
PkrI GCNGC 2 cut(s) 529, 789
Psp124BI GAGCTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 237, 563
PstI CTGCAG 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 626
SacI GAGCTC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 278
SaqAI TTAA 8 cut(s) 306, 693, 711, 774, 905, 921, 972, 1038
SatI GCNGC 2 cut(s) 528, 788
Sau3AI GATC 3 cut(s) 133, 423, 865
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 5 cut(s) 171, 290, 537, 735, 845
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 1 cut(s) 127
Sfr274I CTCGAG 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 626
SmlI CTYRAG 2 cut(s) 65, 170
SmoI CTYRAG 2 cut(s) 65, 170
SphI GCATGC 1 cut(s) 794
SsiI CCGC 2 cut(s) 359, 502
SspI AATATT 1 cut(s) 14
SspMI CTAG 1 cut(s) 137
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 896
TaaI ACNGT 2 cut(s) 78, 784
TaqI TCGA 6 cut(s) 114, 171, 516, 688, 878, 968
TfiI GAWTC 3 cut(s) 54, 657, 965
Tru1I TTAA 8 cut(s) 306, 693, 711, 774, 905, 921, 972, 1038
Tru9I TTAA 8 cut(s) 306, 693, 711, 774, 905, 921, 972, 1038
TscAI CASTG 6 cut(s) 232, 298, 333, 447, 789, 832
TseFI GTSAC 2 cut(s) 550, 739
TseI GCWGC 2 cut(s) 527, 787
Tsp45I GTSAC 2 cut(s) 550, 739
TspDTI ATGAA 8 cut(s) 60, 264, 762, 830, 843, 926, 1061, 1083
TspRI CASTG 6 cut(s) 232, 298, 333, 447, 789, 832
XapI RAATTY 3 cut(s) 901, 933, 1075
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 2 cut(s) 305, 794
XhoI CTCGAG 1 cut(s) 170
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.