Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8273143.1

Orthogroup ID

OG0007950

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 825

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8273143.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 824 bp

atgcttgttggtagcagtggtttggctccgaatagcctgattaggtctgctaccccaatttcttcattgctgaagagctccagtgtcgtgcatgttaattatatcagcaatttcacactggttgtgttcaggaagagttacgaaaatgcaggtctatttgagcagtatcgccttccggctgactgccaatccctcacaaacaatagacctttgatcgagaaaatggagcctcttgtgaaggaaaagccagtggaggacgggaagatggctacttatttgcctaattttattgatgtttcctcaaagaagcggttggtctatatcgatattggggcagcagagcacctgaaatcaaatgtcacagactggttcctgccttcttatccgattacacacagagctttccatgtctattttgttgaccacaacacttctgtgctattgtcttatgtcaaaaagccgggaatcaccttcgtttatcatccagggctggctggaattaaggacaaggacaatgttaacatcgaagcagatgcagagccctatgtcgcagatgaagggtttgattttcttgtttggtttaaagaaacagtgcagcatgcggagtttgtggtgctgaagatgaatgcaggcagtgtagaattgaagttcctgagggatctgtttgagagtggagccatatgctttgtcgacgagctgtttcttcactgctctggccacatagacggggaaggtccaatgccggtagactgcatggacatcttcaagagcctccgcagcagtggtgtgtatgtgcatcagtggtggggagaagacaaccccgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

275

Amino Acids

30.94

Weight (kDa)

5.55

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53400
fragaria_vesca	FvH4_6g15740
malus_domestica	MD04G1099200.v1.1 MD12G1119800.v1.1
prunus_persica	Prupe.6G237600_v2.0.a1
pyrus_communis	pycom04g09410 pycom12g11870
rosa_chinensis	RchiOBHm_Chr1g0337551 RchiOBHm_Chr3g0469451 RchiOBHm_Chr7g0226531
rosa_laevigata	RLG00000024349
rosa_multiflora	Rmu_co8273143.1_g000001 Rmu_sc0005274.1_g000004 Rmu_sc0008852.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411880
rosa_rugosa	Rorug03G0101700
rosa_samantha	Rh3AG150800 Rh3BG174500 Rh3CG165500 Rh3DG200900 Rh4DG150800
rosa_wichuraiana	Rw0G023820 Rw3G014240 Rw5G022020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AccI	GTMKAC	2 cut(s)	690, 747
AciI	CCGC	3 cut(s)	310, 602, 775
AclWI	GGATC	1 cut(s)	666
AcoI	YGGCCR	1 cut(s)	715
AcuI	CTGAAG	2 cut(s)	92, 638
AgsI	TTSAA	2 cut(s)	646, 766
AjnI	CCWGG	1 cut(s)	484
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	3 cut(s)	78, 401, 697
AluI	AGCT	3 cut(s)	78, 401, 697
Alw21I	GWGCWC	2 cut(s)	80, 345
AlwI	GGATC	1 cut(s)	666
AoxI	GGCC	1 cut(s)	715
ApeKI	GCWGC	3 cut(s)	335, 595, 777
AspS9I	GGNCC	1 cut(s)	734
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	734
AxyI	CCTNAGG	1 cut(s)	653
BalI	TGGCCA	1 cut(s)	717
BanII	GRGCYC	2 cut(s)	80, 543
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	2 cut(s)	80, 345
BbvI	GCAGC	3 cut(s)	347, 607, 789
BccI	CCATC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	336, 596, 778
BlsI	GCNGC	3 cut(s)	337, 597, 779
Bme1390I	CCNGG	2 cut(s)	462, 486
Bme18I	GGWCC	1 cut(s)	734
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	4 cut(s)	27, 228, 371, 676
BmrFI	CCNGG	2 cut(s)	462, 486
BmsI	GCATC	2 cut(s)	523, 805
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	485
Bse118I	RCCGGY	1 cut(s)	742
Bse1I	ACTGG	4 cut(s)	81, 123, 248, 371
Bse21I	CCTNAGG	1 cut(s)	653
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	486
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	1 cut(s)	481
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	4 cut(s)	81, 123, 248, 371
BseXI	GCAGC	3 cut(s)	347, 607, 789
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	1 cut(s)	717
BshVI	ATCGAT	1 cut(s)	324
BsiHKAI	GWGCWC	2 cut(s)	80, 345
BsiSI	CCGG	3 cut(s)	176, 461, 743
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	1 cut(s)	717
Bsp1286I	GDGCHC	3 cut(s)	80, 345, 543
Bsp143I	GATC	2 cut(s)	213, 658
BspACI	CCGC	3 cut(s)	310, 602, 775
BspANI	GGCC	1 cut(s)	717
BspCNI	CTCAG	1 cut(s)	645
BspDI	ATCGAT	1 cut(s)	324
BspLI	GGNNCC	4 cut(s)	27, 228, 371, 676
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	666
BspQI	GCTCTTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	742
BsrI	ACTGG	4 cut(s)	81, 123, 248, 371
BssAI	RCCGGY	1 cut(s)	742
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	2 cut(s)	213, 658
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	2 cut(s)	68, 128
BstC8I	GCNNGC	3 cut(s)	492, 600, 631
BstDEI	CTNAG	1 cut(s)	653
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	2 cut(s)	216, 661
BstMBI	GATC	2 cut(s)	213, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	777
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	2 cut(s)	95, 602
BstSCI	CCNGG	2 cut(s)	460, 484
BstV1I	GCAGC	3 cut(s)	347, 607, 789
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
Bsu15I	ATCGAT	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	717
BsuTUI	ATCGAT	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	4 cut(s)	22, 640, 706, 787
BtsIMutI	CAGTG	9 cut(s)	22, 88, 116, 255, 597, 640, 706, 787, 806
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	492, 600, 631
Cfr10I	RCCGGY	1 cut(s)	742
Cfr13I	GGNCC	1 cut(s)	734
ClaI	ATCGAT	1 cut(s)	324
CviAII	CATG	4 cut(s)	92, 407, 599, 754
DdeI	CTNAG	1 cut(s)	653
DpnI	GATC	2 cut(s)	215, 660
DpnII	GATC	2 cut(s)	213, 658
DraI	TTTAAA	1 cut(s)	583
EaeI	YGGCCR	1 cut(s)	715
Eam1104I	CTCTTC	2 cut(s)	68, 128
EarI	CTCTTC	2 cut(s)	68, 128
Ecl136II	GAGCTC	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	80, 543
Eco47I	GGWCC	1 cut(s)	734
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	92, 638
Eco81I	CCTNAGG	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	484
EcoT38I	GRGCYC	2 cut(s)	80, 543
FaeI	CATG	4 cut(s)	95, 410, 602, 757
FatI	CATG	4 cut(s)	91, 406, 598, 753
FauNDI	CATATG	1 cut(s)	680
FblI	GTMKAC	2 cut(s)	690, 747
Fnu4HI	GCNGC	3 cut(s)	336, 596, 778
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	2 cut(s)	80, 543
Fsp4HI	GCNGC	3 cut(s)	336, 596, 778
GluI	GCNGC	3 cut(s)	336, 596, 778
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	717
HapII	CCGG	3 cut(s)	176, 461, 743
Hin1II	CATG	4 cut(s)	95, 410, 602, 757
HincII	GTYRAC	3 cut(s)	421, 520, 691
HindII	GTYRAC	3 cut(s)	421, 520, 691
HinfI	GANTC	1 cut(s)	465
HpaI	GTTAAC	1 cut(s)	520
HpaII	CCGG	3 cut(s)	176, 461, 743
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	4 cut(s)	421, 520, 691, 748
Hpy188I	TCNGA	2 cut(s)	30, 387
Hpy188III	TCNNGA	4 cut(s)	130, 217, 652, 766
Hpy8I	GTNNAC	4 cut(s)	421, 520, 691, 748
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	6 cut(s)	182, 232, 387, 481, 551, 725
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4V	TGCA	7 cut(s)	91, 149, 536, 595, 629, 753, 796
HpyF10VI	GCNNNNNNNGC	1 cut(s)	777
HpyF3I	CTNAG	1 cut(s)	653
Hsp92II	CATG	4 cut(s)	95, 410, 602, 757
KspAI	GTTAAC	1 cut(s)	520
Kzo9I	GATC	2 cut(s)	213, 658
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	4 cut(s)	31, 83, 226, 674
Lsp1109I	GCAGC	3 cut(s)	347, 607, 789
LweI	GCATC	2 cut(s)	523, 805
MaeIII	GTNAC	2 cut(s)	137, 358
MalI	GATC	2 cut(s)	215, 660
MboI	GATC	2 cut(s)	213, 658
MboII	GAAGA	8 cut(s)	54, 85, 145, 274, 631, 695, 754, 824
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	3 cut(s)	80, 345, 543
MlsI	TGGCCA	1 cut(s)	717
MluCI	AATT	6 cut(s)	57, 97, 109, 283, 498, 641
MluNI	TGGCCA	1 cut(s)	717
MnlI	CCTC	6 cut(s)	203, 240, 247, 310, 648, 782
Mox20I	TGGCCA	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	717
MseI	TTAA	4 cut(s)	96, 501, 519, 582
MslI	CAYNNNNRTG	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	717
MspI	CCGG	3 cut(s)	176, 461, 743
MspR9I	CCNGG	2 cut(s)	462, 486
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	777
NciI	CCSGG	1 cut(s)	462
NdeI	CATATG	1 cut(s)	680
NdeII	GATC	2 cut(s)	213, 658
NlaIII	CATG	4 cut(s)	95, 410, 602, 757
NlaIV	GGNNCC	4 cut(s)	27, 228, 371, 676
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	2 cut(s)	95, 602
OliI	CACNNNNGTG	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	602
PciSI	GCTCTTC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	465
PkrI	GCNGC	3 cut(s)	337, 597, 779
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	4 cut(s)	27, 228, 371, 676
PspPI	GGNCC	1 cut(s)	734
PsuI	RGATCY	1 cut(s)	658
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	80
SalI	GTCGAC	1 cut(s)	689
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	4 cut(s)	96, 501, 519, 582
SatI	GCNGC	3 cut(s)	336, 596, 778
Sau3AI	GATC	2 cut(s)	213, 658
Sau96I	GGNCC	1 cut(s)	734
ScrFI	CCNGG	2 cut(s)	462, 486
SduI	GDGCHC	3 cut(s)	80, 345, 543
SetI	ASST	9 cut(s)	47, 80, 154, 211, 348, 403, 473, 699, 736
SfaNI	GCATC	2 cut(s)	523, 805
SinI	GGWCC	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	434
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	6 cut(s)	57, 97, 109, 283, 498, 641
SsiI	CCGC	3 cut(s)	310, 602, 775
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	460, 484
TaaI	ACNGT	1 cut(s)	592
TaqI	TCGA	4 cut(s)	216, 324, 525, 690
TasI	AATT	6 cut(s)	57, 97, 109, 283, 498, 641
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	4 cut(s)	96, 501, 519, 582
Tru9I	TTAA	4 cut(s)	96, 501, 519, 582
TscAI	CASTG	9 cut(s)	22, 88, 123, 255, 597, 640, 713, 787, 806
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	3 cut(s)	335, 595, 777
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	54, 570, 638
TspRI	CASTG	9 cut(s)	22, 88, 123, 255, 597, 640, 713, 787, 806
VpaK11BI	GGWCC	1 cut(s)	734
XceI	RCATGY	2 cut(s)	95, 602
XmiI	GTMKAC	2 cut(s)	690, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.