MD12G1119800.v1.1

Methyltransferase domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
19186233 .. 19188724
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1119800.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGATTCGGGCCCGAGTCATCACGAAGAGAATCATGGATTTGAAGGGCGTGAGAATGCAGATCCTTCATGGGCCTTTGGCCCGGCGTGTGTTTTTCCGGGCATTCTTTATCGCCACGGCTATGTCGATCATACCGTTGATCCACATTTTGTCCGGGACCTACATGACAATGTTCACTTTTGTGAACCCCGGCGACTGCGCCGCCGAATTGGGCCACGTCGCCCCTATCGAAGTGACCGCGGGGAAGTTTAATTTCCAGAGTCCGTTCTTCGTGCCCTTCTGGAGATCTAATGGTTCGGAGCAGTGCAAGCGGGATGTGAATTTGACTGTCAGTGTGGTCAGAGAGCTCATGGGTCAGAAGCTATTGAAATACGGTACAAGAGCTCTCTGTGTCGGAGAAGGGTCTGCCTCGGCCGGGCTGGCATTGCAAGATTTGGGATTTCCCGATGCTCGTGCTGTTTACAAACACCGGTTCTTCTCGCTCAAGCACAAACAGTTTGTGTATGAAATTGACTATGAGGACAAGTCCTTTGATTTTGTGCTTTCCAGGGATCTCGATAAGGTTTCTGTCCCTGCGCTTCTTGTGCTTGAGATCGAGCGTGTTCTTAGCCCCGGTGGAATTGGGGCTATGCTTGTGGGTAGCAGTGTTTCCTCCCCGAATAGCTTGATTAGGTCTGCTACCCCAATTTCTTCACTGCTGAAAAGTTCCAGTGTTGTGCACGTTAATTACGTCAATAACTTCACACTGGTTGTGTTCAAGAAAAATTATGACAATGCCGGGGTCTTTGAGCAGTATCACCTTCCGGCTGACTGCCCATCCCTCACAAGCAATCGACCTTTCATTGGGAAAATGGAGCGTCTGGTGAAGGAAAAACCAGTGGAGTATGGAAAGAGGTTTGCATACTTACCTAATTTTGTTGATGTTTCCTCAAAGAGGCGGTTGGTCTATATTGATATTGGGGCAGCAGCGCATCTGAACGCAAATGTTACAAATTGGTTCCTGCCTTCTTATCCCATCGAACGCAAAGATTTCAATGTTTATTTTGTTGACCATAACACTTCTGTTCTGTTATCCTACGTCAAAAAGCCCGGAATCACCTTTGTTTATCATCCAGGGCTGGCCGGAATCAAGCCGCAAGTCAATGTTCCAATTGATGGGATCACAGATCCGTATGTCGGAGATGAAGGGTTTGATTTCCTCGTTTGGTTCAAAGAAACTGTGGGGTTTGCCGATTTCGTGGTGCTCAAGATGAATGCAGGCAATGTAGAACTGAAGTTCCTCACGGAACTGTTTGAAAGTGGAGCCATATGCTTTGTGGACGAGCTGTTTCTTCACTGCTCAGGCCAAGTAGATGCTGGAGGTGAAATGCCGGTGGACTGCATGGACATCTTTGGAAGCCTCCGTAGCAGTGGTGTGTTTGTCCATCAGTGGTGGGGGGACGGCAACCCCGGTGATGTTCTCCTATCTGTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

492

Amino Acids

54.63

Weight (kDa)

7.63

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7870 PF25276 290 - 353 6.7e-06 Domain of unknown function (DUF7870)
DUF7870 PF25276 401 - 478 1.1e-13 Domain of unknown function (DUF7870)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1154
AccII CGCG 1 cut(s) 239
AciI CCGC 6 cut(s) 201, 237, 239, 310, 937, 1133
AclWI GGATC 5 cut(s) 55, 133, 558, 1160, 1166
AcoI YGGCCR 2 cut(s) 411, 1119
AcsI RAATTY 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 1292
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 5 cut(s) 414, 842, 933, 1154, 1175
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 6 cut(s) 43, 367, 757, 1033, 1210, 1295
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 2 cut(s) 545, 1111
AleI CACNNNNGTG 1 cut(s) 179
AloI GAACNNNNNNTCC 2 cut(s) 1260, 1292
AluBI AGCT 5 cut(s) 346, 361, 383, 663, 1324
AluI AGCT 5 cut(s) 346, 361, 383, 663, 1324
Alw21I GWGCWC 4 cut(s) 348, 385, 720, 1245
Alw44I GTGCAC 1 cut(s) 716
AlwI GGATC 5 cut(s) 55, 133, 558, 1160, 1166
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 7 cut(s) 9, 71, 78, 211, 411, 1119, 1342
ApaI GGGCCC 1 cut(s) 13
ApaLI GTGCAC 1 cut(s) 716
ApeKI GCWGC 2 cut(s) 962, 965
ApoI RAATTY 1 cut(s) 319
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AsiGI ACCGGT 1 cut(s) 468
AspLEI GCGC 3 cut(s) 200, 577, 970
AspS9I GGNCC 6 cut(s) 9, 10, 71, 79, 156, 211
AsuC2I CCSGG 9 cut(s) 82, 98, 154, 189, 415, 612, 778, 1089, 1449
AsuHPI GGTGA 5 cut(s) 788, 874, 1087, 1373, 1463
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 156
BaeGI GKGCMC 3 cut(s) 13, 276, 720
BanII GRGCYC 3 cut(s) 13, 348, 385
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 4 cut(s) 348, 385, 720, 1245
BbvI GCAGC 2 cut(s) 974, 977
BccI CCATC 4 cut(s) 823, 1022, 1148, 1431
BceAI ACGGC 2 cut(s) 132, 1456
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 2 cut(s) 547, 1113
BcnI CCSGG 9 cut(s) 82, 98, 154, 189, 415, 612, 778, 1089, 1449
BglI GCCNNNNNGGC 1 cut(s) 419
BglII AGATCT 1 cut(s) 284
BisI GCNGC 4 cut(s) 201, 963, 966, 1133
BlsI GCNGC 4 cut(s) 202, 964, 967, 1134
Bme18I GGWCC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 6 cut(s) 9, 10, 71, 79, 156, 211
BmiI GGNNCC 4 cut(s) 11, 157, 998, 1303
BmsI GCATC 3 cut(s) 436, 979, 1342
BpmI CTGGAG 2 cut(s) 301, 1377
Bpu10I CCTNAGC 1 cut(s) 1339
BpuEI CTTGAG 3 cut(s) 467, 608, 1229
BpuMI CCSGG 9 cut(s) 82, 98, 154, 189, 415, 612, 778, 1089, 1449
BsaJI CCNNGG 9 cut(s) 114, 187, 237, 408, 546, 610, 777, 1112, 1447
BsaWI WCCGGW 1 cut(s) 468
Bsc4I CCNNNNNNNGG 5 cut(s) 414, 842, 933, 1154, 1175
Bse118I RCCGGY 2 cut(s) 468, 1369
Bse1I ACTGG 3 cut(s) 708, 750, 875
Bse3DI GCAATG 2 cut(s) 422, 1267
BseBI CCWGG 2 cut(s) 547, 1113
BseDI CCNNGG 9 cut(s) 114, 187, 237, 408, 546, 610, 777, 1112, 1447
BseGI GGATG 3 cut(s) 319, 815, 1108
BseLI CCNNNNNNNGG 5 cut(s) 414, 842, 933, 1154, 1175
BseMI GCAATG 2 cut(s) 422, 1267
BseMII CTCAG 1 cut(s) 1353
BseNI ACTGG 3 cut(s) 708, 750, 875
BseSI GKGCMC 3 cut(s) 13, 276, 720
BseX3I CGGCCG 1 cut(s) 411
BseXI GCAGC 2 cut(s) 974, 977
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 7 cut(s) 11, 73, 80, 213, 413, 1121, 1344
BshTI ACCGGT 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 4 cut(s) 348, 385, 720, 1245
BsiHKCI CYCGRG 1 cut(s) 12
BslFI GGGAC 3 cut(s) 169, 554, 1451
BslI CCNNNNNNNGG 5 cut(s) 414, 842, 933, 1154, 1175
BsmFI GGGAC 3 cut(s) 169, 554, 1451
BsmI GAATGC 3 cut(s) 60, 101, 1258
BsnI GGCC 7 cut(s) 11, 73, 80, 213, 413, 1121, 1344
BsoBI CYCGRG 1 cut(s) 12
Bsp120I GGGCCC 1 cut(s) 9
Bsp1286I GDGCHC 6 cut(s) 13, 276, 348, 385, 720, 1245
Bsp143I GATC 8 cut(s) 60, 126, 138, 284, 550, 591, 1158, 1165
BspACI CCGC 6 cut(s) 201, 237, 239, 310, 937, 1133
BspANI GGCC 7 cut(s) 11, 73, 80, 213, 413, 1121, 1344
BspCNI CTCAG 1 cut(s) 1352
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 4 cut(s) 11, 157, 998, 1303
BspPI GGATC 5 cut(s) 55, 133, 558, 1160, 1166
BsrDI GCAATG 2 cut(s) 422, 1267
BsrFI RCCGGY 2 cut(s) 468, 1369
BsrI ACTGG 3 cut(s) 708, 750, 875
BssAI RCCGGY 2 cut(s) 468, 1369
BssECI CCNNGG 9 cut(s) 114, 187, 237, 408, 546, 610, 777, 1112, 1447
BssMI GATC 8 cut(s) 60, 126, 138, 284, 550, 591, 1158, 1165
BssSI CACGAG 1 cut(s) 450
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 547, 1113
Bst4CI ACNGT 6 cut(s) 135, 328, 374, 495, 1219, 1290
Bst6I CTCTTC 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 308, 420, 1119, 1258
BstDEI CTNAG 2 cut(s) 605, 1339
BstDSI CCRYGG 2 cut(s) 114, 237
BstENI CCTNNNNNAGG 1 cut(s) 931
BstF5I GGATG 3 cut(s) 319, 815, 1108
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 3 cut(s) 200, 577, 970
BstKTI GATC 8 cut(s) 63, 129, 141, 287, 553, 594, 1161, 1168
BstMBI GATC 8 cut(s) 60, 126, 138, 284, 550, 591, 1158, 1165
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 5 cut(s) 307, 419, 424, 583, 1404
BstNI CCWGG 2 cut(s) 547, 1113
BstSLI GKGCMC 3 cut(s) 13, 276, 720
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 974, 977
BstX2I RGATCY 4 cut(s) 60, 284, 550, 1165
BstYI RGATCY 4 cut(s) 60, 284, 550, 1165
BstZI CGGCCG 1 cut(s) 411
BsuRI GGCC 7 cut(s) 11, 73, 80, 213, 413, 1121, 1344
BtgI CCRYGG 2 cut(s) 114, 237
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 319, 815, 1108
BtsI GCAGTG 5 cut(s) 308, 649, 692, 1333, 1414
Cac8I GCNNGC 4 cut(s) 308, 420, 1119, 1258
CfoI GCGC 3 cut(s) 200, 577, 970
Cfr10I RCCGGY 2 cut(s) 468, 1369
Cfr13I GGNCC 6 cut(s) 9, 10, 71, 79, 156, 211
Cfr42I CCGCGG 1 cut(s) 240
CseI GACGC 1 cut(s) 845
Csp6I GTAC 1 cut(s) 375
CspAI ACCGGT 1 cut(s) 468
CviAII CATG 5 cut(s) 34, 68, 163, 349, 1381
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 2 cut(s) 605, 1339
DpnI GATC 8 cut(s) 62, 128, 140, 286, 552, 593, 1160, 1167
DpnII GATC 8 cut(s) 60, 126, 138, 284, 550, 591, 1158, 1165
EaeI YGGCCR 2 cut(s) 411, 1119
EagI CGGCCG 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 346, 383
EclXI CGGCCG 1 cut(s) 411
Eco24I GRGCYC 3 cut(s) 13, 348, 385
Eco47I GGWCC 1 cut(s) 156
Eco52I CGGCCG 1 cut(s) 411
Eco53kI GAGCTC 2 cut(s) 346, 383
Eco57I CTGAAG 1 cut(s) 1292
Eco88I CYCGRG 1 cut(s) 12
EcoICRI GAGCTC 2 cut(s) 346, 383
EcoNI CCTNNNNNAGG 1 cut(s) 931
EcoO109I RGGNCCY 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 545, 1111
EcoT38I GRGCYC 3 cut(s) 13, 348, 385
FaeI CATG 5 cut(s) 37, 71, 166, 352, 1384
FaqI GGGAC 3 cut(s) 169, 554, 1451
FatI CATG 5 cut(s) 33, 67, 162, 348, 1380
FauI CCCGC 2 cut(s) 232, 303
FauNDI CATATG 1 cut(s) 1307
Fnu4HI GCNGC 4 cut(s) 201, 963, 966, 1133
FokI GGATG 3 cut(s) 326, 802, 1095
FriOI GRGCYC 3 cut(s) 13, 348, 385
Fsp4HI GCNGC 4 cut(s) 201, 963, 966, 1133
GlaI GCGC 3 cut(s) 199, 576, 969
GluI GCNGC 4 cut(s) 201, 963, 966, 1133
GsuI CTGGAG 2 cut(s) 301, 1377
HaeIII GGCC 7 cut(s) 11, 73, 80, 213, 413, 1121, 1344
HgaI GACGC 1 cut(s) 845
HhaI GCGC 3 cut(s) 200, 577, 970
Hin1II CATG 5 cut(s) 37, 71, 166, 352, 1384
Hin6I GCGC 3 cut(s) 198, 575, 968
HinP1I GCGC 3 cut(s) 198, 575, 968
HincII GTYRAC 1 cut(s) 1048
HindII GTYRAC 1 cut(s) 1048
HinfI GANTC 6 cut(s) 4, 15, 30, 259, 1092, 1125
HphI GGTGA 5 cut(s) 788, 874, 1087, 1373, 1463
Hpy166II GTNNAC 7 cut(s) 174, 184, 460, 718, 1048, 1318, 1375
Hpy188I TCNGA 6 cut(s) 298, 341, 357, 395, 975, 1178
Hpy188III TCNNGA 7 cut(s) 22, 256, 280, 443, 554, 757, 1246
Hpy8I GTNNAC 7 cut(s) 174, 184, 460, 718, 1048, 1318, 1375
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 8 cut(s) 37, 74, 286, 392, 809, 859, 1014, 1178
HpyCH4III ACNGT 6 cut(s) 135, 328, 374, 495, 1219, 1290
HpyCH4IV ACGT 4 cut(s) 216, 720, 729, 1077
HpyCH4V TGCA 7 cut(s) 58, 306, 427, 718, 899, 1256, 1380
HpyF10VI GCNNNNNNNGC 5 cut(s) 307, 419, 424, 583, 1404
HpyF3I CTNAG 2 cut(s) 605, 1339
HpySE526I ACGT 4 cut(s) 216, 720, 729, 1077
Hsp92II CATG 5 cut(s) 37, 71, 166, 352, 1384
HspAI GCGC 3 cut(s) 198, 575, 968
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 8 cut(s) 60, 126, 138, 284, 550, 591, 1158, 1165
LmnI GCTCC 3 cut(s) 298, 853, 1301
Lsp1109I GCAGC 2 cut(s) 974, 977
LweI GCATC 3 cut(s) 436, 979, 1342
MaeII ACGT 4 cut(s) 216, 720, 729, 1077
MaeIII GTNAC 2 cut(s) 232, 985
MalI GATC 8 cut(s) 62, 128, 140, 286, 552, 593, 1160, 1167
MboI GATC 8 cut(s) 60, 126, 138, 284, 550, 591, 1158, 1165
MboII GAAGA 5 cut(s) 37, 259, 466, 681, 1322
MfeI CAATTG 1 cut(s) 1149
MflI RGATCY 4 cut(s) 60, 284, 550, 1165
MhlI GDGCHC 6 cut(s) 13, 276, 348, 385, 720, 1245
MlyI GAGTC 2 cut(s) 24, 268
MmeI TCCRAC 2 cut(s) 373, 1156
MseI TTAA 2 cut(s) 249, 723
MslI CAYNNNNRTG 3 cut(s) 119, 167, 179
MspA1I CMGCKG 1 cut(s) 239
MunI CAATTG 1 cut(s) 1149
Mva1269I GAATGC 3 cut(s) 60, 101, 1258
MvaI CCWGG 2 cut(s) 547, 1113
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 5 cut(s) 307, 419, 424, 583, 1404
NciI CCSGG 9 cut(s) 82, 98, 154, 189, 415, 612, 778, 1089, 1449
NdeI CATATG 1 cut(s) 1307
NdeII GATC 8 cut(s) 60, 126, 138, 284, 550, 591, 1158, 1165
NlaIII CATG 5 cut(s) 37, 71, 166, 352, 1384
NlaIV GGNNCC 4 cut(s) 11, 157, 998, 1303
NmeAIII GCCGAG 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 232
OliI CACNNNNGTG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 4 cut(s) 122, 131, 225, 726
PctI GAATGC 3 cut(s) 60, 101, 1258
PfeI GAWTC 4 cut(s) 4, 30, 1092, 1125
PflMI CCANNNNNTGG 1 cut(s) 1154
PfoI TCCNGGA 1 cut(s) 152
PinAI ACCGGT 1 cut(s) 468
PkrI GCNGC 4 cut(s) 202, 964, 967, 1134
PleI GAGTC 2 cut(s) 23, 267
PpsI GAGTC 2 cut(s) 23, 267
PpuMI RGGWCCY 1 cut(s) 156
Psp124BI GAGCTC 2 cut(s) 348, 385
Psp5II RGGWCCY 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 545, 1111
PspGI CCWGG 2 cut(s) 545, 1111
PspN4I GGNNCC 4 cut(s) 11, 157, 998, 1303
PspOMI GGGCCC 1 cut(s) 9
PspPI GGNCC 6 cut(s) 9, 10, 71, 79, 156, 211
PspPPI RGGWCCY 1 cut(s) 156
PsuI RGATCY 4 cut(s) 60, 284, 550, 1165
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 3 cut(s) 119, 167, 179
SacI GAGCTC 2 cut(s) 348, 385
SacII CCGCGG 1 cut(s) 240
SaqAI TTAA 2 cut(s) 249, 723
SatI GCNGC 4 cut(s) 201, 963, 966, 1133
Sau3AI GATC 8 cut(s) 60, 126, 138, 284, 550, 591, 1158, 1165
Sau96I GGNCC 6 cut(s) 9, 10, 71, 79, 156, 211
SchI GAGTC 2 cut(s) 24, 268
SduI GDGCHC 6 cut(s) 13, 276, 348, 385, 720, 1245
SfaNI GCATC 3 cut(s) 436, 979, 1342
Sfr303I CCGCGG 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 240
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 3 cut(s) 119, 167, 179
SmlI CTYRAG 3 cut(s) 482, 587, 1244
SmoI CTYRAG 3 cut(s) 482, 587, 1244
SsiI CCGC 6 cut(s) 201, 237, 239, 310, 937, 1133
SstI GAGCTC 2 cut(s) 348, 385
TaaI ACNGT 6 cut(s) 135, 328, 374, 495, 1219, 1290
TaiI ACGT 4 cut(s) 219, 723, 732, 1080
TaqI TCGA 6 cut(s) 125, 228, 555, 594, 832, 1017
TauI GCSGC 2 cut(s) 203, 1135
TfiI GAWTC 4 cut(s) 4, 30, 1092, 1125
Tru1I TTAA 2 cut(s) 249, 723
Tru9I TTAA 2 cut(s) 249, 723
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 962, 965
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 5 cut(s) 56, 519, 829, 1197, 1265
TspGWI ACGGA 4 cut(s) 252, 1158, 1298, 1391
Van91I CCANNNNNTGG 1 cut(s) 1154
VneI GTGCAC 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 931
XapI RAATTY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 2 cut(s) 1312, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.