Rw0G023820

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01100
OG0007950
Physical Location & Seq
Reverse (-)
48128 .. 49087
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023820.1

Sequence Viewer

Length: 960 bp
ATGGGCGAGCAGCTTTTGAACGGTGATAAGGCTCTCTGTGTCGGTGAAGGATCGGCCTCTGCCGTGATGGCGTTGCAAGATTTGGGGTTTCCCAATGCTCGTGGTGTTTATGAACACCGATTCTTCTCCCTCAAGCGCAAACAGTTTGGGTATGAGATTTACTATGAGGACAAGTCTTTCGATTTCGTGTTCTGCAGGGATCTAGACAAGGCTTCAGTCCCTGCTCTGCTTGTGCTCGAGATTGAGCGCGTTCTTAGCCCAGGTGGAATTGGGGCTATGCTTGTTGGTAGCAGTGGTTTAGCTCCGAATAGCCTGATTAGGTCTGCTACCCCAATTTCTTCATTGCTGAAGAGCTCCAGTGTCGTGCATGTTAATTATATCAGCAATTTCACACTGGTTGTGTTCAGGAAGAGTTACGAAAATGGGGGTCTATTTGAGCAGTATCGCCTTCCGGCTGACTGCCAATCCCTCACGAACAATAGACCTTTGATCGAGAAAATGGAGCCTCTTGTGAAGGAAAAGCTAGTGGAGGATGGGAAGATGGCTACTTATTTGCCTAATTTTATTGATGTTTCCTCAAAGAAGCGGTTGGTCTATATCGATATTGGGGCAGCAGAGCACCTGAAATCAAATGTCACAGACTGGTTCCTGCCTTCTTATCCGATTACACACAGAGCTTTCCATGTCTATTTTGTTGACCACAACACTTCTGTGCTATTGTCTTATGTCAAAAAGCCGGGAATCACCTTCGTTTATCATCCAGGGCTGGCTGGAATTAAGGACAAGGACAATGTTTACATTGAAGCAGATGGAGAGCCCTATGTCGCATATGAAGGGTTTGATTTTCTTGTTTGGTTTAAAGAAACAGTGCAGCATGCCGAGTTTGTGGTGCTGAAGATGAATGCAGGCAGTGTGGAATTGAAGTTCCTCATCCACACGAGGCCACTTCCAATTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

319

Amino Acids

35.78

Weight (kDa)

6.32

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 586
AclWI GGATC 2 cut(s) 58, 207
AcuI CTGAAG 3 cut(s) 198, 368, 914
AgsI TTSAA 3 cut(s) 19, 803, 922
AjnI CCWGG 2 cut(s) 259, 760
AleI CACNNNNGTG 1 cut(s) 710
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 5 cut(s) 13, 302, 354, 523, 677
AluI AGCT 5 cut(s) 13, 302, 354, 523, 677
Alw21I GWGCWC 3 cut(s) 237, 356, 621
AlwI GGATC 2 cut(s) 58, 207
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 54, 941
ApeKI GCWGC 3 cut(s) 10, 611, 871
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 2 cut(s) 138, 249
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 3 cut(s) 35, 56, 736
AvaI CYCGRG 1 cut(s) 236
BanII GRGCYC 2 cut(s) 356, 819
BauI CACGAG 2 cut(s) 99, 937
Bbv12I GWGCWC 3 cut(s) 237, 356, 621
BbvI GCAGC 3 cut(s) 22, 623, 883
BccI CCATC 4 cut(s) 61, 527, 535, 803
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 261, 762
BcnI CCSGG 1 cut(s) 738
BfaI CTAG 2 cut(s) 203, 524
BfmI CTRYAG 1 cut(s) 193
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 3 cut(s) 11, 612, 872
BlsI GCNGC 3 cut(s) 12, 613, 873
Bme1390I CCNGG 3 cut(s) 261, 738, 762
BmeT110I CYCGRG 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 504, 647
BmrFI CCNGG 3 cut(s) 261, 738, 762
BpmI CTGGAG 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 738
Bsa29I ATCGAT 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 259, 761
Bse1I ACTGG 3 cut(s) 357, 399, 647
Bse3DI GCAATG 1 cut(s) 341
BseBI CCWGG 2 cut(s) 261, 762
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 2 cut(s) 259, 761
BseGI GGATG 3 cut(s) 538, 757, 930
BseMI GCAATG 1 cut(s) 341
BseNI ACTGG 3 cut(s) 357, 399, 647
BseXI GCAGC 3 cut(s) 22, 623, 883
BsgI GTGCAG 1 cut(s) 890
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 56, 943
BshVI ATCGAT 1 cut(s) 600
BsiHKAI GWGCWC 3 cut(s) 237, 356, 621
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 452, 737
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 2 cut(s) 56, 943
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 4 cut(s) 237, 356, 621, 819
Bsp143I GATC 3 cut(s) 50, 199, 489
BspACI CCGC 1 cut(s) 586
BspANI GGCC 2 cut(s) 56, 943
BspDI ATCGAT 1 cut(s) 600
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 504, 647
BspMAI CTGCAG 1 cut(s) 197
BspPI GGATC 2 cut(s) 58, 207
BspQI GCTCTTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 3 cut(s) 357, 399, 647
BssECI CCNNGG 2 cut(s) 259, 761
BssMI GATC 3 cut(s) 50, 199, 489
BssSI CACGAG 2 cut(s) 99, 937
Bst2BI CACGAG 2 cut(s) 99, 937
Bst2UI CCWGG 2 cut(s) 261, 762
Bst4CI ACNGT 3 cut(s) 23, 144, 868
Bst6I CTCTTC 2 cut(s) 344, 404
BstC8I GCNNGC 4 cut(s) 8, 768, 876, 907
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 3 cut(s) 538, 757, 930
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 2 cut(s) 138, 249
BstKTI GATC 3 cut(s) 53, 202, 492
BstMBI GATC 3 cut(s) 50, 199, 489
BstMWI GCNNNNNNNGC 2 cut(s) 68, 255
BstNI CCWGG 2 cut(s) 261, 762
BstNSI RCATGY 2 cut(s) 371, 878
BstSCI CCNGG 3 cut(s) 259, 736, 760
BstSFI CTRYAG 1 cut(s) 193
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 22, 623, 883
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 600
BsuRI GGCC 2 cut(s) 56, 943
BsuTUI ATCGAT 1 cut(s) 600
BtsCI GGATG 3 cut(s) 538, 757, 930
BtsI GCAGTG 2 cut(s) 298, 916
BtsIMutI CAGTG 5 cut(s) 298, 364, 392, 873, 916
Cac8I GCNNGC 4 cut(s) 8, 768, 876, 907
CaiI CAGNNNCTG 1 cut(s) 221
CfoI GCGC 2 cut(s) 138, 249
ClaI ATCGAT 1 cut(s) 600
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 3 cut(s) 368, 683, 875
DdeI CTNAG 1 cut(s) 254
DpnI GATC 3 cut(s) 52, 201, 491
DpnII GATC 3 cut(s) 50, 199, 489
DraI TTTAAA 1 cut(s) 859
Eam1104I CTCTTC 2 cut(s) 344, 404
EarI CTCTTC 2 cut(s) 344, 404
Ecl136II GAGCTC 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 356, 819
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 3 cut(s) 198, 368, 914
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 354
EcoRII CCWGG 2 cut(s) 259, 760
EcoT38I GRGCYC 2 cut(s) 356, 819
FaeI CATG 3 cut(s) 371, 686, 878
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 367, 682, 874
FauNDI CATATG 1 cut(s) 829
Fnu4HI GCNGC 3 cut(s) 11, 612, 872
FokI GGATG 3 cut(s) 545, 744, 917
FriOI GRGCYC 2 cut(s) 356, 819
Fsp4HI GCNGC 3 cut(s) 11, 612, 872
FspBI CTAG 2 cut(s) 203, 524
GlaI GCGC 2 cut(s) 137, 248
GluI GCNGC 3 cut(s) 11, 612, 872
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 2 cut(s) 56, 943
HapII CCGG 2 cut(s) 452, 737
HhaI GCGC 2 cut(s) 138, 249
Hin1II CATG 3 cut(s) 371, 686, 878
Hin6I GCGC 2 cut(s) 136, 247
HinP1I GCGC 2 cut(s) 136, 247
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 2 cut(s) 120, 741
HpaII CCGG 2 cut(s) 452, 737
HphI GGTGA 3 cut(s) 35, 56, 736
Hpy166II GTNNAC 2 cut(s) 697, 796
Hpy188I TCNGA 2 cut(s) 306, 663
Hpy188III TCNNGA 5 cut(s) 203, 238, 406, 472, 493
Hpy8I GTNNAC 2 cut(s) 697, 796
HpyAV CCTTC 6 cut(s) 41, 458, 508, 663, 757, 827
HpyCH4III ACNGT 3 cut(s) 23, 144, 868
HpyCH4V TGCA 5 cut(s) 76, 195, 367, 871, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 255
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 3 cut(s) 371, 686, 878
HspAI GCGC 2 cut(s) 136, 247
Kzo9I GATC 3 cut(s) 50, 199, 489
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 3 cut(s) 307, 359, 502
Lsp1109I GCAGC 3 cut(s) 22, 623, 883
MaeI CTAG 2 cut(s) 203, 524
MaeIII GTNAC 2 cut(s) 413, 634
MalI GATC 3 cut(s) 52, 201, 491
MboI GATC 3 cut(s) 50, 199, 489
MboII GAAGA 6 cut(s) 115, 330, 361, 421, 550, 907
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 4 cut(s) 237, 356, 621, 819
MluCI AATT 8 cut(s) 267, 333, 373, 385, 559, 774, 917, 951
MnlI CCTC 9 cut(s) 67, 140, 160, 479, 516, 523, 586, 933, 938
MseI TTAA 3 cut(s) 372, 777, 858
MslI CAYNNNNRTG 1 cut(s) 710
MspI CCGG 2 cut(s) 452, 737
MspR9I CCNGG 3 cut(s) 261, 738, 762
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 2 cut(s) 261, 762
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 68, 255
NciI CCSGG 1 cut(s) 738
NdeI CATATG 1 cut(s) 829
NdeII GATC 3 cut(s) 50, 199, 489
NlaIII CATG 3 cut(s) 371, 686, 878
NlaIV GGNNCC 2 cut(s) 504, 647
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 634
NspI RCATGY 2 cut(s) 371, 878
OliI CACNNNNGTG 1 cut(s) 710
PaeI GCATGC 1 cut(s) 878
PaeR7I CTCGAG 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 344
PctI GAATGC 1 cut(s) 907
PfeI GAWTC 2 cut(s) 120, 741
PkrI GCNGC 3 cut(s) 12, 613, 873
Psp124BI GAGCTC 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 259, 760
PspGI CCWGG 2 cut(s) 259, 760
PspN4I GGNNCC 2 cut(s) 504, 647
PstI CTGCAG 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 710
SacI GAGCTC 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 344
SaqAI TTAA 3 cut(s) 372, 777, 858
SatI GCNGC 3 cut(s) 11, 612, 872
Sau3AI GATC 3 cut(s) 50, 199, 489
ScrFI CCNGG 3 cut(s) 261, 738, 762
SduI GDGCHC 4 cut(s) 237, 356, 621, 819
SfcI CTRYAG 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 2 cut(s) 131, 236
SmoI CTYRAG 2 cut(s) 131, 236
SphI GCATGC 1 cut(s) 878
Sse9I AATT 8 cut(s) 267, 333, 373, 385, 559, 774, 917, 951
SsiI CCGC 1 cut(s) 586
SspMI CTAG 2 cut(s) 203, 524
SstI GAGCTC 1 cut(s) 356
StyD4I CCNGG 3 cut(s) 259, 736, 760
TaaI ACNGT 3 cut(s) 23, 144, 868
TaqI TCGA 4 cut(s) 180, 237, 492, 600
TasI AATT 8 cut(s) 267, 333, 373, 385, 559, 774, 917, 951
TfiI GAWTC 2 cut(s) 120, 741
Tru1I TTAA 3 cut(s) 372, 777, 858
Tru9I TTAA 3 cut(s) 372, 777, 858
TscAI CASTG 5 cut(s) 298, 364, 399, 873, 916
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 3 cut(s) 10, 611, 871
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 4 cut(s) 126, 330, 846, 914
TspRI CASTG 5 cut(s) 298, 364, 399, 873, 916
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 2 cut(s) 371, 878
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 2 cut(s) 203, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.