Methyltransferase domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53400 |
| fragaria_vesca | FvH4_6g15740 |
| malus_domestica | MD04G1099200.v1.1 MD12G1119800.v1.1 |
| prunus_persica | Prupe.6G237600_v2.0.a1 |
| pyrus_communis | pycom04g09410 pycom12g11870 |
| rosa_chinensis | RchiOBHm_Chr1g0337551 RchiOBHm_Chr3g0469451 RchiOBHm_Chr7g0226531 |
| rosa_laevigata | RLG00000024349 |
| rosa_multiflora | Rmu_co8273143.1_g000001 Rmu_sc0005274.1_g000004 Rmu_sc0008852.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00411880 |
| rosa_rugosa | Rorug03G0101700 |
| rosa_samantha | Rh3AG150800 Rh3BG174500 Rh3CG165500 Rh3DG200900 Rh4DG150800 |
| rosa_wichuraiana | Rw0G023820 Rw3G014240 Rw5G022020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1409 |
| AccBSI | CCGCTC | 1 cut(s) | 66 |
| AccI | GTMKAC | 2 cut(s) | 1278, 1335 |
| AccII | CGCG | 2 cut(s) | 54, 561 |
| AccIII | TCCGGA | 1 cut(s) | 170 |
| AciI | CCGC | 4 cut(s) | 64, 898, 1190, 1363 |
| AclWI | GGATC | 4 cut(s) | 46, 370, 519, 1254 |
| AcoI | YGGCCR | 2 cut(s) | 366, 1303 |
| AcuI | CTGAAG | 2 cut(s) | 680, 1226 |
| AfaI | GTAC | 1 cut(s) | 250 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 245 |
| AgsI | TTSAA | 5 cut(s) | 10, 142, 331, 1234, 1354 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 484 |
| AjnI | CCWGG | 3 cut(s) | 24, 571, 1072 |
| AleI | CACNNNNGTG | 1 cut(s) | 1022 |
| AluBI | AGCT | 7 cut(s) | 13, 310, 325, 344, 666, 989, 1285 |
| AluI | AGCT | 7 cut(s) | 13, 310, 325, 344, 666, 989, 1285 |
| Alw21I | GWGCWC | 3 cut(s) | 549, 668, 933 |
| AlwI | GGATC | 4 cut(s) | 46, 370, 519, 1254 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 533 |
| Ama87I | CYCGRG | 2 cut(s) | 202, 548 |
| Aor13HI | TCCGGA | 1 cut(s) | 170 |
| AoxI | GGCC | 5 cut(s) | 45, 178, 366, 372, 1303 |
| ApeKI | GCWGC | 4 cut(s) | 322, 923, 1183, 1365 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 473, 505 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 137 |
| AspLEI | GCGC | 4 cut(s) | 54, 265, 450, 561 |
| AspS9I | GGNCC | 5 cut(s) | 28, 46, 178, 199, 1322 |
| AsuC2I | CCSGG | 5 cut(s) | 49, 203, 204, 226, 1050 |
| AsuHPI | GGTGA | 3 cut(s) | 347, 368, 1048 |
| AvaI | CYCGRG | 2 cut(s) | 202, 548 |
| AvaII | GGWCC | 3 cut(s) | 28, 199, 1322 |
| AxyI | CCTNAGG | 1 cut(s) | 1241 |
| BalI | TGGCCA | 1 cut(s) | 1305 |
| BanII | GRGCYC | 2 cut(s) | 668, 1131 |
| BauI | CACGAG | 1 cut(s) | 411 |
| BbsI | GAAGAC | 1 cut(s) | 1407 |
| Bbv12I | GWGCWC | 3 cut(s) | 549, 668, 933 |
| BbvI | GCAGC | 4 cut(s) | 334, 935, 1195, 1377 |
| BccI | CCATC | 2 cut(s) | 373, 847 |
| BceAI | ACGGC | 3 cut(s) | 65, 165, 359 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1103, 1137 |
| BciT130I | CCWGG | 3 cut(s) | 26, 573, 1074 |
| BcnI | CCSGG | 5 cut(s) | 49, 203, 204, 226, 1050 |
| BfaI | CTAG | 1 cut(s) | 515 |
| BfmI | CTRYAG | 1 cut(s) | 505 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 380 |
| BisI | GCNGC | 4 cut(s) | 323, 924, 1184, 1366 |
| BlsI | GCNGC | 4 cut(s) | 324, 925, 1185, 1367 |
| Bme1390I | CCNGG | 8 cut(s) | 26, 49, 203, 204, 226, 573, 1050, 1074 |
| Bme18I | GGWCC | 3 cut(s) | 28, 199, 1322 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 484 |
| BmeT110I | CYCGRG | 2 cut(s) | 202, 548 |
| BmgT120I | GGNCC | 5 cut(s) | 28, 46, 178, 199, 1322 |
| BmiI | GGNNCC | 5 cut(s) | 201, 615, 816, 959, 1264 |
| BmrFI | CCNGG | 8 cut(s) | 26, 49, 203, 204, 226, 573, 1050, 1074 |
| BmsI | GCATC | 2 cut(s) | 1111, 1393 |
| BpiI | GAAGAC | 1 cut(s) | 1407 |
| BpmI | CTGGAG | 2 cut(s) | 8, 652 |
| BpuEI | CTTGAG | 1 cut(s) | 428 |
| BpuMI | CCSGG | 5 cut(s) | 49, 203, 204, 226, 1050 |
| Bsa29I | ATCGAT | 1 cut(s) | 912 |
| BsaJI | CCNNGG | 6 cut(s) | 81, 102, 202, 369, 571, 1073 |
| BsaWI | WCCGGW | 2 cut(s) | 119, 170 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 152, 182 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 245 |
| Bse118I | RCCGGY | 1 cut(s) | 1330 |
| Bse1I | ACTGG | 4 cut(s) | 669, 711, 836, 959 |
| Bse21I | CCTNAGG | 1 cut(s) | 1241 |
| Bse3DI | GCAATG | 1 cut(s) | 653 |
| BseAI | TCCGGA | 1 cut(s) | 170 |
| BseBI | CCWGG | 3 cut(s) | 26, 573, 1074 |
| BseCI | ATCGAT | 1 cut(s) | 912 |
| BseDI | CCNNGG | 6 cut(s) | 81, 102, 202, 369, 571, 1073 |
| BseGI | GGATG | 1 cut(s) | 1069 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BseMI | GCAATG | 1 cut(s) | 653 |
| BseMII | CTCAG | 1 cut(s) | 1232 |
| BseNI | ACTGG | 4 cut(s) | 669, 711, 836, 959 |
| BseX3I | CGGCCG | 1 cut(s) | 366 |
| BseXI | GCAGC | 4 cut(s) | 334, 935, 1195, 1377 |
| BsgI | GTGCAG | 1 cut(s) | 1202 |
| Bsh1236I | CGCG | 2 cut(s) | 54, 561 |
| Bsh1285I | CGRYCG | 1 cut(s) | 369 |
| BshFI | GGCC | 5 cut(s) | 47, 180, 368, 374, 1305 |
| BshVI | ATCGAT | 1 cut(s) | 912 |
| BsiEI | CGRYCG | 1 cut(s) | 369 |
| BsiHKAI | GWGCWC | 3 cut(s) | 549, 668, 933 |
| BsiHKCI | CYCGRG | 2 cut(s) | 202, 548 |
| BsiSI | CCGG | 8 cut(s) | 49, 120, 171, 203, 226, 764, 1049, 1331 |
| BslFI | GGGAC | 1 cut(s) | 515 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BsmFI | GGGAC | 1 cut(s) | 515 |
| BsmI | GAATGC | 1 cut(s) | 1219 |
| BsnI | GGCC | 5 cut(s) | 47, 180, 368, 374, 1305 |
| BsoBI | CYCGRG | 2 cut(s) | 202, 548 |
| Bsp1286I | GDGCHC | 4 cut(s) | 549, 668, 933, 1131 |
| Bsp13I | TCCGGA | 1 cut(s) | 170 |
| Bsp143I | GATC | 5 cut(s) | 38, 362, 511, 801, 1246 |
| BspACI | CCGC | 4 cut(s) | 64, 898, 1190, 1363 |
| BspANI | GGCC | 5 cut(s) | 47, 180, 368, 374, 1305 |
| BspCNI | CTCAG | 1 cut(s) | 1233 |
| BspDI | ATCGAT | 1 cut(s) | 912 |
| BspEI | TCCGGA | 1 cut(s) | 170 |
| BspFNI | CGCG | 2 cut(s) | 54, 561 |
| BspLI | GGNNCC | 5 cut(s) | 201, 615, 816, 959, 1264 |
| BspMAI | CTGCAG | 1 cut(s) | 509 |
| BspPI | GGATC | 4 cut(s) | 46, 370, 519, 1254 |
| BspQI | GCTCTTC | 1 cut(s) | 656 |
| BsrBI | CCGCTC | 1 cut(s) | 66 |
| BsrDI | GCAATG | 1 cut(s) | 653 |
| BsrFI | RCCGGY | 1 cut(s) | 1330 |
| BsrI | ACTGG | 4 cut(s) | 669, 711, 836, 959 |
| BssAI | RCCGGY | 1 cut(s) | 1330 |
| BssECI | CCNNGG | 6 cut(s) | 81, 102, 202, 369, 571, 1073 |
| BssMI | GATC | 5 cut(s) | 38, 362, 511, 801, 1246 |
| BssSI | CACGAG | 1 cut(s) | 411 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst2BI | CACGAG | 1 cut(s) | 411 |
| Bst2UI | CCWGG | 3 cut(s) | 26, 573, 1074 |
| Bst4CI | ACNGT | 5 cut(s) | 164, 292, 335, 456, 1180 |
| Bst6I | CTCTTC | 2 cut(s) | 656, 716 |
| BstC8I | GCNNGC | 5 cut(s) | 272, 320, 1080, 1188, 1219 |
| BstDEI | CTNAG | 2 cut(s) | 566, 1241 |
| BstDSI | CCRYGG | 1 cut(s) | 81 |
| BstF5I | GGATG | 1 cut(s) | 1069 |
| BstFNI | CGCG | 2 cut(s) | 54, 561 |
| BstHHI | GCGC | 4 cut(s) | 54, 265, 450, 561 |
| BstKTI | GATC | 5 cut(s) | 41, 365, 514, 804, 1249 |
| BstMBI | GATC | 5 cut(s) | 38, 362, 511, 801, 1246 |
| BstMCI | CGRYCG | 1 cut(s) | 369 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 271, 380, 567, 1365 |
| BstNI | CCWGG | 3 cut(s) | 26, 573, 1074 |
| BstNSI | RCATGY | 2 cut(s) | 683, 1190 |
| BstSCI | CCNGG | 8 cut(s) | 24, 47, 201, 202, 224, 571, 1048, 1072 |
| BstSFI | CTRYAG | 1 cut(s) | 505 |
| BstUI | CGCG | 2 cut(s) | 54, 561 |
| BstV1I | GCAGC | 4 cut(s) | 334, 935, 1195, 1377 |
| BstV2I | GAAGAC | 1 cut(s) | 1407 |
| BstX2I | RGATCY | 3 cut(s) | 38, 511, 1246 |
| BstYI | RGATCY | 3 cut(s) | 38, 511, 1246 |
| BstZI | CGGCCG | 1 cut(s) | 366 |
| Bsu15I | ATCGAT | 1 cut(s) | 912 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1241 |
| BsuRI | GGCC | 5 cut(s) | 47, 180, 368, 374, 1305 |
| BsuTUI | ATCGAT | 1 cut(s) | 912 |
| BtgI | CCRYGG | 1 cut(s) | 81 |
| BtsCI | GGATG | 1 cut(s) | 1069 |
| BtsI | GCAGTG | 5 cut(s) | 272, 610, 1228, 1294, 1375 |
| Cac8I | GCNNGC | 5 cut(s) | 272, 320, 1080, 1188, 1219 |
| CaiI | CAGNNNCTG | 1 cut(s) | 533 |
| CfoI | GCGC | 4 cut(s) | 54, 265, 450, 561 |
| Cfr10I | RCCGGY | 1 cut(s) | 1330 |
| Cfr13I | GGNCC | 5 cut(s) | 28, 46, 178, 199, 1322 |
| Cfr9I | CCCGGG | 1 cut(s) | 202 |
| ClaI | ATCGAT | 1 cut(s) | 912 |
| Csp6I | GTAC | 1 cut(s) | 249 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 394, 429 |
| CviAII | CATG | 5 cut(s) | 130, 680, 995, 1187, 1342 |
| CviQI | GTAC | 1 cut(s) | 249 |
| DdeI | CTNAG | 2 cut(s) | 566, 1241 |
| DpnI | GATC | 5 cut(s) | 40, 364, 513, 803, 1248 |
| DpnII | GATC | 5 cut(s) | 38, 362, 511, 801, 1246 |
| DraI | TTTAAA | 1 cut(s) | 1171 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1409 |
| DriI | GACNNNNNGTC | 1 cut(s) | 484 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1409 |
| EaeI | YGGCCR | 2 cut(s) | 366, 1303 |
| EagI | CGGCCG | 1 cut(s) | 366 |
| Eam1104I | CTCTTC | 2 cut(s) | 656, 716 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 484 |
| EarI | CTCTTC | 2 cut(s) | 656, 716 |
| Ecl136II | GAGCTC | 1 cut(s) | 666 |
| EclXI | CGGCCG | 1 cut(s) | 366 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco24I | GRGCYC | 2 cut(s) | 668, 1131 |
| Eco47I | GGWCC | 3 cut(s) | 28, 199, 1322 |
| Eco52I | CGGCCG | 1 cut(s) | 366 |
| Eco53kI | GAGCTC | 1 cut(s) | 666 |
| Eco57I | CTGAAG | 2 cut(s) | 680, 1226 |
| Eco81I | CCTNAGG | 1 cut(s) | 1241 |
| Eco88I | CYCGRG | 2 cut(s) | 202, 548 |
| EcoICRI | GAGCTC | 1 cut(s) | 666 |
| EcoO109I | RGGNCCY | 1 cut(s) | 28 |
| EcoRII | CCWGG | 3 cut(s) | 24, 571, 1072 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| EcoT38I | GRGCYC | 2 cut(s) | 668, 1131 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| FaeI | CATG | 5 cut(s) | 133, 683, 998, 1190, 1345 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 200, 232 |
| FaqI | GGGAC | 1 cut(s) | 515 |
| FatI | CATG | 5 cut(s) | 129, 679, 994, 1186, 1341 |
| FauNDI | CATATG | 1 cut(s) | 1268 |
| FblI | GTMKAC | 2 cut(s) | 1278, 1335 |
| Fnu4HI | GCNGC | 4 cut(s) | 323, 924, 1184, 1366 |
| FokI | GGATG | 1 cut(s) | 1056 |
| FriOI | GRGCYC | 2 cut(s) | 668, 1131 |
| Fsp4HI | GCNGC | 4 cut(s) | 323, 924, 1184, 1366 |
| FspBI | CTAG | 1 cut(s) | 515 |
| GlaI | GCGC | 4 cut(s) | 53, 264, 449, 560 |
| GluI | GCNGC | 4 cut(s) | 323, 924, 1184, 1366 |
| GsuI | CTGGAG | 2 cut(s) | 8, 652 |
| HaeIII | GGCC | 5 cut(s) | 47, 180, 368, 374, 1305 |
| HapII | CCGG | 8 cut(s) | 49, 120, 171, 203, 226, 764, 1049, 1331 |
| HhaI | GCGC | 4 cut(s) | 54, 265, 450, 561 |
| Hin1II | CATG | 5 cut(s) | 133, 683, 998, 1190, 1345 |
| Hin6I | GCGC | 4 cut(s) | 52, 263, 448, 559 |
| HinP1I | GCGC | 4 cut(s) | 52, 263, 448, 559 |
| HincII | GTYRAC | 4 cut(s) | 193, 1009, 1108, 1279 |
| HindII | GTYRAC | 4 cut(s) | 193, 1009, 1108, 1279 |
| HinfI | GANTC | 3 cut(s) | 235, 432, 1053 |
| HpaI | GTTAAC | 1 cut(s) | 1108 |
| HpaII | CCGG | 8 cut(s) | 49, 120, 171, 203, 226, 764, 1049, 1331 |
| HphI | GGTGA | 3 cut(s) | 347, 368, 1048 |
| Hpy166II | GTNNAC | 8 cut(s) | 109, 151, 193, 283, 1009, 1108, 1279, 1336 |
| Hpy188I | TCNGA | 5 cut(s) | 222, 234, 305, 618, 975 |
| Hpy188III | TCNNGA | 8 cut(s) | 16, 171, 515, 550, 718, 805, 1240, 1354 |
| Hpy8I | GTNNAC | 8 cut(s) | 109, 151, 193, 283, 1009, 1108, 1279, 1336 |
| Hpy99I | CGWCG | 2 cut(s) | 1283, 1415 |
| HpyAV | CCTTC | 8 cut(s) | 41, 353, 770, 820, 975, 1069, 1139, 1313 |
| HpyCH4III | ACNGT | 5 cut(s) | 164, 292, 335, 456, 1180 |
| HpyCH4V | TGCA | 9 cut(s) | 270, 388, 507, 679, 1124, 1183, 1217, 1341, 1384 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 271, 380, 567, 1365 |
| HpyF3I | CTNAG | 2 cut(s) | 566, 1241 |
| Hsp92II | CATG | 5 cut(s) | 133, 683, 998, 1190, 1345 |
| HspAI | GCGC | 4 cut(s) | 52, 263, 448, 559 |
| Kpn2I | TCCGGA | 1 cut(s) | 170 |
| KspAI | GTTAAC | 1 cut(s) | 1108 |
| Kzo9I | GATC | 5 cut(s) | 38, 362, 511, 801, 1246 |
| LguI | GCTCTTC | 1 cut(s) | 656 |
| LmnI | GCTCC | 4 cut(s) | 619, 671, 814, 1262 |
| Lsp1109I | GCAGC | 4 cut(s) | 334, 935, 1195, 1377 |
| LweI | GCATC | 2 cut(s) | 1111, 1393 |
| MaeI | CTAG | 1 cut(s) | 515 |
| MaeIII | GTNAC | 3 cut(s) | 182, 725, 946 |
| MalI | GATC | 5 cut(s) | 40, 364, 513, 803, 1248 |
| MbiI | CCGCTC | 1 cut(s) | 66 |
| MboI | GATC | 5 cut(s) | 38, 362, 511, 801, 1246 |
| MboII | GAAGA | 9 cut(s) | 427, 642, 673, 733, 862, 1219, 1283, 1342, 1412 |
| MflI | RGATCY | 3 cut(s) | 38, 511, 1246 |
| MhlI | GDGCHC | 4 cut(s) | 549, 668, 933, 1131 |
| MlsI | TGGCCA | 1 cut(s) | 1305 |
| MluCI | AATT | 8 cut(s) | 96, 579, 645, 685, 697, 871, 1086, 1229 |
| MluNI | TGGCCA | 1 cut(s) | 1305 |
| MnlI | CCTC | 9 cut(s) | 178, 364, 452, 791, 828, 835, 898, 1236, 1370 |
| Mox20I | TGGCCA | 1 cut(s) | 1305 |
| MroI | TCCGGA | 1 cut(s) | 170 |
| MroXI | GAANNNNTTC | 1 cut(s) | 137 |
| MscI | TGGCCA | 1 cut(s) | 1305 |
| MseI | TTAA | 4 cut(s) | 684, 1089, 1107, 1170 |
| MslI | CAYNNNNRTG | 2 cut(s) | 134, 1022 |
| Msp20I | TGGCCA | 1 cut(s) | 1305 |
| MspI | CCGG | 8 cut(s) | 49, 120, 171, 203, 226, 764, 1049, 1331 |
| MspR9I | CCNGG | 8 cut(s) | 26, 49, 203, 204, 226, 573, 1050, 1074 |
| Mva1269I | GAATGC | 1 cut(s) | 1219 |
| MvaI | CCWGG | 3 cut(s) | 26, 573, 1074 |
| MvnI | CGCG | 2 cut(s) | 54, 561 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 271, 380, 567, 1365 |
| NciI | CCSGG | 5 cut(s) | 49, 203, 204, 226, 1050 |
| NdeI | CATATG | 1 cut(s) | 1268 |
| NdeII | GATC | 5 cut(s) | 38, 362, 511, 801, 1246 |
| NlaIII | CATG | 5 cut(s) | 133, 683, 998, 1190, 1345 |
| NlaIV | GGNNCC | 5 cut(s) | 201, 615, 816, 959, 1264 |
| NmeAIII | GCCGAG | 1 cut(s) | 394 |
| NmuCI | GTSAC | 2 cut(s) | 182, 946 |
| NspI | RCATGY | 2 cut(s) | 683, 1190 |
| OliI | CACNNNNGTG | 1 cut(s) | 1022 |
| PaeI | GCATGC | 1 cut(s) | 1190 |
| PaeR7I | CTCGAG | 1 cut(s) | 548 |
| PciSI | GCTCTTC | 1 cut(s) | 656 |
| PctI | GAATGC | 1 cut(s) | 1219 |
| PdmI | GAANNNNTTC | 1 cut(s) | 137 |
| PfeI | GAWTC | 3 cut(s) | 235, 432, 1053 |
| PflFI | GACNNNGTC | 1 cut(s) | 188 |
| PkrI | GCNGC | 4 cut(s) | 324, 925, 1185, 1367 |
| PpuMI | RGGWCCY | 1 cut(s) | 28 |
| Psp124BI | GAGCTC | 1 cut(s) | 668 |
| Psp5II | RGGWCCY | 1 cut(s) | 28 |
| Psp6I | CCWGG | 3 cut(s) | 24, 571, 1072 |
| PspGI | CCWGG | 3 cut(s) | 24, 571, 1072 |
| PspN4I | GGNNCC | 5 cut(s) | 201, 615, 816, 959, 1264 |
| PspPI | GGNCC | 5 cut(s) | 28, 46, 178, 199, 1322 |
| PspPPI | RGGWCCY | 1 cut(s) | 28 |
| PstI | CTGCAG | 1 cut(s) | 509 |
| PstNI | CAGNNNCTG | 1 cut(s) | 533 |
| PsuI | RGATCY | 3 cut(s) | 38, 511, 1246 |
| PsyI | GACNNNGTC | 1 cut(s) | 188 |
| RsaI | GTAC | 1 cut(s) | 250 |
| RsaNI | GTAC | 1 cut(s) | 249 |
| RseI | CAYNNNNRTG | 2 cut(s) | 134, 1022 |
| SacI | GAGCTC | 1 cut(s) | 668 |
| SalI | GTCGAC | 1 cut(s) | 1277 |
| SapI | GCTCTTC | 1 cut(s) | 656 |
| SaqAI | TTAA | 4 cut(s) | 684, 1089, 1107, 1170 |
| SatI | GCNGC | 4 cut(s) | 323, 924, 1184, 1366 |
| Sau3AI | GATC | 5 cut(s) | 38, 362, 511, 801, 1246 |
| Sau96I | GGNCC | 5 cut(s) | 28, 46, 178, 199, 1322 |
| ScrFI | CCNGG | 8 cut(s) | 26, 49, 203, 204, 226, 573, 1050, 1074 |
| SduI | GDGCHC | 4 cut(s) | 549, 668, 933, 1131 |
| SfaNI | GCATC | 2 cut(s) | 1111, 1393 |
| SfcI | CTRYAG | 1 cut(s) | 505 |
| Sfr274I | CTCGAG | 1 cut(s) | 548 |
| SinI | GGWCC | 3 cut(s) | 28, 199, 1322 |
| SlaI | CTCGAG | 1 cut(s) | 548 |
| SmaI | CCCGGG | 1 cut(s) | 204 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 134, 1022 |
| SmlI | CTYRAG | 3 cut(s) | 14, 443, 548 |
| SmoI | CTYRAG | 3 cut(s) | 14, 443, 548 |
| SphI | GCATGC | 1 cut(s) | 1190 |
| Sse9I | AATT | 8 cut(s) | 96, 579, 645, 685, 697, 871, 1086, 1229 |
| SsiI | CCGC | 4 cut(s) | 64, 898, 1190, 1363 |
| SspMI | CTAG | 1 cut(s) | 515 |
| SstI | GAGCTC | 1 cut(s) | 668 |
| StyD4I | CCNGG | 8 cut(s) | 24, 47, 201, 202, 224, 571, 1048, 1072 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 5 cut(s) | 164, 292, 335, 456, 1180 |
| TaqI | TCGA | 8 cut(s) | 255, 492, 549, 804, 912, 1113, 1278, 1413 |
| TasI | AATT | 8 cut(s) | 96, 579, 645, 685, 697, 871, 1086, 1229 |
| TfiI | GAWTC | 3 cut(s) | 235, 432, 1053 |
| Tru1I | TTAA | 4 cut(s) | 684, 1089, 1107, 1170 |
| Tru9I | TTAA | 4 cut(s) | 684, 1089, 1107, 1170 |
| TseFI | GTSAC | 2 cut(s) | 182, 946 |
| TseI | GCWGC | 4 cut(s) | 322, 923, 1183, 1365 |
| Tsp45I | GTSAC | 2 cut(s) | 182, 946 |
| TspDTI | ATGAA | 6 cut(s) | 146, 202, 438, 642, 1158, 1226 |
| TspGWI | ACGGA | 1 cut(s) | 51 |
| TspMI | CCCGGG | 1 cut(s) | 202 |
| Tth111I | GACNNNGTC | 1 cut(s) | 188 |
| VpaK11BI | GGWCC | 3 cut(s) | 28, 199, 1322 |
| XbaI | TCTAGA | 1 cut(s) | 514 |
| XceI | RCATGY | 2 cut(s) | 683, 1190 |
| XhoI | CTCGAG | 1 cut(s) | 548 |
| XmaI | CCCGGG | 1 cut(s) | 202 |
| XmiI | GTMKAC | 2 cut(s) | 1278, 1335 |
| XmnI | GAANNNNTTC | 1 cut(s) | 137 |
| XspI | CTAG | 1 cut(s) | 515 |