AT3G54040

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007418
Physical Location & Seq
Reverse (-)
20013726 .. 20015653
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54040.2

Sequence Viewer

Length: 552 bp
ATGTCTTTTTCTTCCCTCAAATTGCCAATCTTTCTCATTCTCTCAAGTCTTCTCCATGCGGCTATAGGGGAAAACATTGTTTGCGAGAATCTGCCAACAAATATGTGCTCGTTCTCAATATCCGCTTCCGGGAAAAGATGTATATTGGAGACGGCTAATGTCGCCGGAGAATTCACTTGCCGCACTTCCGCAGTGGACGTGGAAGGGATTGTAAACCACGTGGAGACCGACGAGTGCGTTTCCGCTTGTGGGGTTGATCGGAAAACCGTAGGGATCTCGTCAGACTCCTTGATGGAGGCAGGTTTCGCCGCTAAGCTTTGCTCATCCGCTTGCTTGGACTATTGCCCTAACATTCTTGATCTCTATTTCAACCTCGCCGCCGGTGAAGGTGCATTTTTACCTGATCTATGTGATGCTCAACGGATGAATCCCCAGCGTTCGATGATGGAATTCATCAGCTCCGGCGCCGCACCAGGCCCTGTCTCCGAAATTGCACCAGGCCCCACCTCCGAAGAAGTCTCATCTCCTGCTCTAGCTCCGGCTTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

183

Amino Acids

19.11

Weight (kDa)

4.35

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 82 - 236 4.3e-70 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 464
AciI CCGC 9 cut(s) 59, 123, 181, 189, 243, 309, 327, 378, 468
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 2 cut(s) 170, 449
AcvI CACGTG 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 465
AfiI CCNNNNNNNGG 2 cut(s) 129, 249
AgsI TTSAA 1 cut(s) 370
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 2 cut(s) 472, 496
AluBI AGCT 3 cut(s) 316, 459, 536
AluI AGCT 3 cut(s) 316, 459, 536
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 4 cut(s) 143, 218, 487, 523
AlwI GGATC 1 cut(s) 281
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 2 cut(s) 475, 499
ApoI RAATTY 2 cut(s) 170, 449
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 476, 500
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 464
BbrPI CACGTG 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 110
BccI CCATC 2 cut(s) 286, 439
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 2 cut(s) 474, 498
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 4 cut(s) 143, 218, 487, 523
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 290
BisI GCNGC 5 cut(s) 60, 181, 309, 378, 468
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 5 cut(s) 61, 182, 310, 379, 469
Bme1390I CCNGG 3 cut(s) 130, 474, 498
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 476, 500
BmiI GGNNCC 2 cut(s) 466, 502
BmrFI CCNGG 3 cut(s) 130, 474, 498
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 41
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 130
BsaAI YACGTR 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 249
Bse118I RCCGGY 1 cut(s) 380
BseBI CCWGG 2 cut(s) 474, 498
BseGI GGATG 2 cut(s) 323, 429
BseLI CCNNNNNNNGG 2 cut(s) 129, 249
BseYI CCCAGC 1 cut(s) 432
BshFI GGCC 2 cut(s) 477, 501
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 5 cut(s) 129, 165, 381, 462, 539
BslI CCNNNNNNNGG 2 cut(s) 129, 249
BsmAI GTCTC 4 cut(s) 143, 218, 487, 523
BsmBI CGTCTC 1 cut(s) 143
BsnI GGCC 2 cut(s) 477, 501
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 4 cut(s) 256, 273, 358, 403
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 9 cut(s) 59, 123, 181, 189, 243, 309, 327, 378, 468
BspANI GGCC 2 cut(s) 477, 501
BspLI GGNNCC 2 cut(s) 466, 502
BspMI ACCTGC 1 cut(s) 290
BspPI GGATC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 380
BssMI GATC 4 cut(s) 256, 273, 358, 403
BssNI GRCGYC 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 474, 498
Bst4CI ACNGT 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 465
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 2 cut(s) 323, 429
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 4 cut(s) 259, 276, 361, 406
BstMAI GTCTC 4 cut(s) 143, 218, 487, 523
BstMBI GATC 4 cut(s) 256, 273, 358, 403
BstMWI GCNNNNNNNGC 2 cut(s) 161, 305
BstNI CCWGG 2 cut(s) 474, 498
BstSCI CCNGG 3 cut(s) 128, 472, 496
BstSFI CTRYAG 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 2 cut(s) 477, 501
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 323, 429
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 2 cut(s) 476, 500
CviAII CATG 1 cut(s) 56
CviJI RGCY 8 cut(s) 62, 155, 316, 459, 477, 501, 536, 542
CviKI_1 RGCY 8 cut(s) 62, 155, 316, 459, 477, 501, 536, 542
DdeI CTNAG 1 cut(s) 312
DinI GGCGCC 1 cut(s) 466
DpnI GATC 4 cut(s) 258, 275, 360, 405
DpnII GATC 4 cut(s) 256, 273, 358, 403
Eco31I GGTCTC 1 cut(s) 218
Eco72I CACGTG 1 cut(s) 220
EcoO109I RGGNCCY 2 cut(s) 476, 500
EcoRI GAATTC 2 cut(s) 170, 449
EcoRII CCWGG 2 cut(s) 472, 496
EgeI GGCGCC 1 cut(s) 466
EheI GGCGCC 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 1 cut(s) 59
FaiI YATR 6 cut(s) 57, 65, 104, 143, 409, 548
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 5 cut(s) 60, 181, 309, 378, 468
FokI GGATG 2 cut(s) 310, 436
Fsp4HI GCNGC 5 cut(s) 60, 181, 309, 378, 468
FspBI CTAG 1 cut(s) 533
GlaI GCGC 1 cut(s) 466
GluI GCNGC 5 cut(s) 60, 181, 309, 378, 468
GsaI CCCAGC 1 cut(s) 436
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 2 cut(s) 477, 501
HapII CCGG 5 cut(s) 129, 165, 381, 462, 539
HhaI GCGC 1 cut(s) 467
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 88, 284, 427
HpaII CCGG 5 cut(s) 129, 165, 381, 462, 539
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 196, 214
Hpy188I TCNGA 4 cut(s) 261, 283, 487, 511
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 2 cut(s) 196, 214
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 197, 380
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 2 cut(s) 198, 219
HpyCH4V TGCA 2 cut(s) 392, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 305
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 2 cut(s) 198, 219
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 1 cut(s) 465
KasI GGCGCC 1 cut(s) 464
Kzo9I GATC 4 cut(s) 256, 273, 358, 403
LmnI GCTCC 2 cut(s) 464, 541
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 533
MaeII ACGT 2 cut(s) 198, 219
MalI GATC 4 cut(s) 258, 275, 360, 405
MboI GATC 4 cut(s) 256, 273, 358, 403
MboII GAAGA 3 cut(s) 3, 41, 524
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 4 cut(s) 20, 170, 449, 489
Mly113I GGCGCC 1 cut(s) 465
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 4 cut(s) 26, 289, 383, 517
MspI CCGG 5 cut(s) 129, 165, 381, 462, 539
MspR9I CCNGG 3 cut(s) 130, 474, 498
MvaI CCWGG 2 cut(s) 474, 498
MwoI GCNNNNNNNGC 2 cut(s) 161, 305
NarI GGCGCC 1 cut(s) 465
NciI CCSGG 1 cut(s) 130
NdeII GATC 4 cut(s) 256, 273, 358, 403
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 2 cut(s) 466, 502
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 2 cut(s) 88, 427
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 5 cut(s) 61, 182, 310, 379, 469
PleI GAGTC 1 cut(s) 278
PluTI GGCGCC 1 cut(s) 468
PmaCI CACGTG 1 cut(s) 220
PmlI CACGTG 1 cut(s) 220
PpsI GAGTC 1 cut(s) 278
Ppu21I YACGTR 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 472, 496
PspCI CACGTG 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 2 cut(s) 472, 496
PspN4I GGNNCC 2 cut(s) 466, 502
PspPI GGNCC 2 cut(s) 476, 500
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 273
SatI GCNGC 5 cut(s) 60, 181, 309, 378, 468
Sau3AI GATC 4 cut(s) 256, 273, 358, 403
Sau96I GGNCC 2 cut(s) 476, 500
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 3 cut(s) 130, 474, 498
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 63
SfoI GGCGCC 1 cut(s) 466
SgrAI CRCCGGYG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 4 cut(s) 20, 170, 449, 489
SsiI CCGC 9 cut(s) 59, 123, 181, 189, 243, 309, 327, 378, 468
SspDI GGCGCC 1 cut(s) 464
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 3 cut(s) 128, 472, 496
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 2 cut(s) 201, 222
TaqI TCGA 1 cut(s) 440
TaqII GACCGA 1 cut(s) 242
TasI AATT 4 cut(s) 20, 170, 449, 489
TauI GCSGC 5 cut(s) 62, 183, 311, 380, 470
TfiI GAWTC 2 cut(s) 88, 427
TscAI CASTG 1 cut(s) 198
TspDTI ATGAA 2 cut(s) 440, 442
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 1 cut(s) 198
XapI RAATTY 2 cut(s) 170, 449
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.