MD04G1143000.v1.1

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0007418
Physical Location & Seq
Reverse (-)
23265779 .. 23266033
255 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1143000.v1.1.491

Sequence Viewer

Length: 255 bp
ATGATGGCTAAGAAAGGCGGAAAGGTTGAACACGAATGCAGGACATCGGGAGTGGTGGTAGAGAAGATGGCTGAATACATGGAGACGGATGAGTGCATCAAGGCATGCGGTGTTGATAGGAAGGCAATTGGAATTTCCTCTGATACCCTCCTTGACCCTCGAGTTCTCAATAAGCTTTGTTCAACTGCTTGTTACCACAAGTGCCCTAACATTATTGAACTTTACTTCAACATGGCTGTTGGAGAAGGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

85

Amino Acids

9.26

Weight (kDa)

6.08

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 3 - 83 4.6e-38 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 108
AcsI RAATTY 1 cut(s) 132
AgsI TTSAA 4 cut(s) 29, 183, 218, 229
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 159
ApoI RAATTY 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 206
BccI CCATC 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 159
BmsI GCATC 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
BseGI GGATG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 206
BspACI CCGC 2 cut(s) 18, 108
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 106
CviAII CATG 3 cut(s) 79, 105, 232
CviJI RGCY 4 cut(s) 8, 71, 175, 236
CviKI_1 RGCY 4 cut(s) 8, 71, 175, 236
DdeI CTNAG 1 cut(s) 9
EciI GGCGGA 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 3 cut(s) 82, 108, 235
FaiI YATR 4 cut(s) 80, 106, 233, 251
FatI CATG 3 cut(s) 78, 104, 231
FokI GGATG 1 cut(s) 101
Hin1II CATG 3 cut(s) 82, 108, 235
HindIII AAGCTT 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 115, 239
HpyCH4V TGCA 2 cut(s) 39, 96
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 3 cut(s) 82, 108, 235
LpnPI CCDG 1 cut(s) 25
LweI GCATC 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 191
MboII GAAGA 1 cut(s) 76
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 2 cut(s) 126, 132
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 3 cut(s) 148, 158, 168
MunI CAATTG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 41
NlaIII CATG 3 cut(s) 82, 108, 235
NspI RCATGY 1 cut(s) 108
PaeI GCATGC 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 159
PctI GAATGC 1 cut(s) 41
PspXI VCTCGAGB 1 cut(s) 159
SduI GDGCHC 1 cut(s) 206
SetI ASST 3 cut(s) 27, 177, 250
SfaNI GCATC 1 cut(s) 105
Sfr274I CTCGAG 1 cut(s) 159
SlaI CTCGAG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
SphI GCATGC 1 cut(s) 108
Sse9I AATT 2 cut(s) 126, 132
SsiI CCGC 2 cut(s) 18, 108
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 126, 132
TspGWI ACGGA 1 cut(s) 101
XapI RAATTY 1 cut(s) 132
XceI RCATGY 1 cut(s) 108
XhoI CTCGAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.