MD04G1143100.v1.1

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0007418
Physical Location & Seq
Reverse (-)
23268388 .. 23269355
968 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1143100.v1.1.491

Sequence Viewer

Length: 288 bp
ATGGCCAAGCTTTGCTCTGCTCCTTGTTACCAAAAGTGCCCCAACATTGCTGACCTTTACTTCAATTTGGCTGCCGGAGAGGGAGTATTCTTGCCCGATCTCTGTGGCAAGCAACGTTCCAACCCTCACCGTGCCATGATTGCGCTTATGAGCTCCGGCGAGGCCTCCCCCAGTCCCTACGGCTCTCAAGTACCATCAGGGTTGAGTGTAGCATATCCCCCTTCTGAGGGAGAATCACTTCCTCCTTCCGAGGCGTTTGAACCTGCAGCTGCTCCTAGTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

96

Amino Acids

9.86

Weight (kDa)

4.84

Isoelectric Point (pI)

73.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 2 - 62 2e-25 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 271
AclI AACGTT 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 226, 227
AgsI TTSAA 2 cut(s) 64, 260
AluBI AGCT 3 cut(s) 10, 153, 269
AluI AGCT 3 cut(s) 10, 153, 269
Alw21I GWGCWC 1 cut(s) 155
AoxI GGCC 2 cut(s) 3, 162
ApeKI GCWGC 3 cut(s) 71, 266, 269
Asp700I GAANNNNTTC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 41
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 58, 256, 278
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 196
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 271
BisI GCNGC 3 cut(s) 72, 267, 270
BlsI GCNGC 3 cut(s) 73, 268, 271
BmrI ACTGGG 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 227
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 2 cut(s) 226, 227
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 3 cut(s) 58, 256, 278
BshFI GGCC 2 cut(s) 5, 164
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 2 cut(s) 75, 156
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 226, 227
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 2 cut(s) 5, 164
Bsp1286I GDGCHC 2 cut(s) 41, 155
Bsp143I GATC 1 cut(s) 97
BspANI GGCC 2 cut(s) 5, 164
BspCNI CTCAG 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 58, 256, 278
BsuRI GGCC 2 cut(s) 5, 164
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 136
CviJI RGCY 7 cut(s) 5, 10, 71, 153, 164, 183, 269
CviKI_1 RGCY 7 cut(s) 5, 10, 71, 153, 164, 183, 269
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 1 cut(s) 139
FaiI YATR 4 cut(s) 137, 149, 214, 284
FaqI GGGAC 1 cut(s) 159
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 72, 267, 270
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 72, 267, 270
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 144
GluI GCNGC 3 cut(s) 72, 267, 270
HaeIII GGCC 2 cut(s) 5, 164
HapII CCGG 2 cut(s) 75, 156
HhaI GCGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 233
HpaII CCGG 2 cut(s) 75, 156
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 226, 250
HpyAV CCTTC 2 cut(s) 231, 255
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 3 cut(s) 25, 158, 277
LpnPI CCDG 5 cut(s) 88, 169, 183, 184, 276
Lsp1109I GCAGC 3 cut(s) 58, 256, 278
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MhlI GDGCHC 2 cut(s) 41, 155
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 64
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 7 cut(s) 73, 135, 154, 175, 220, 244, 252
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 237
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 75, 156
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 139
PceI AGGCCT 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 3 cut(s) 73, 268, 271
Psp124BI GAGCTC 1 cut(s) 155
Psp1406I AACGTT 1 cut(s) 115
PstI CTGCAG 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SacI GAGCTC 1 cut(s) 155
SatI GCNGC 3 cut(s) 72, 267, 270
Sau3AI GATC 1 cut(s) 97
SduI GDGCHC 2 cut(s) 41, 155
SetI ASST 6 cut(s) 12, 57, 118, 155, 265, 271
SfcI CTRYAG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 64
SseBI AGGCCT 1 cut(s) 164
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 155
StuI AGGCCT 1 cut(s) 164
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 118
TasI AATT 1 cut(s) 64
TfiI GAWTC 1 cut(s) 233
TseI GCWGC 3 cut(s) 71, 266, 269
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.