MD12G1157300.v1.1

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0007418
Physical Location & Seq
Reverse (-)
23799980 .. 23801842
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1157300.v1.1.491

Sequence Viewer

Length: 573 bp
ATGGCGGTTTCCACCAAGTTTTTGGCTCTCTTCCTCTCCTTCCTATCCATCCATGCAGTTCTAGGTGAGTTTATATGCGAGGATTTGCCGAACGATGTTTGTGCATTTTCGGTGTCGTCGGCAGGGAAAAGGTGCTTGTTAGAGACCATGTCCAAGAAAGATGGAAGCATAGAGTATCAGTGCAGGACATCAGAAGTTGTGGTGGAGGGAGTGGCTGATTACATAGAGACAGATCAATGCGTGCAGGCTTGTGGGATTGATAGGAAGTCTGTTGGGATTTCGTCTGATGCCCTCCTTGAGCCTCAGTTCATGGCCAAGCTCTGCTCTGCTCCTTGTTACCAAAAGTGCCCCAACATTGCTGACCTTTACTTCAACTTGGCAGCTGGAGAGGGTGTATTCTTGCCCGATCTCTGCGACAAGCAGCGTTCCAATCCTCACCGTTCCATGATCGCGCTTCTGAGCTCTGGCGAGGCCGCCCCTAGTCCTCACGGCTCCCAATTACCATCAGGGTTGCATGCGGCATATCCCCCTTCAGAGGCATTTGAACCTGCATCTGCTCCTAGTCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

191

Amino Acids

20.29

Weight (kDa)

4.8

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 25 - 167 7.4e-72 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccII CGCG 1 cut(s) 452
AciI CCGC 3 cut(s) 5, 474, 518
AcoI YGGCCR 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 535
AgsI TTSAA 2 cut(s) 373, 545
AluBI AGCT 3 cut(s) 319, 383, 462
AluI AGCT 3 cut(s) 319, 383, 462
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 2 cut(s) 137, 221
AoxI GGCC 2 cut(s) 312, 471
ApeKI GCWGC 2 cut(s) 380, 421
AspLEI GCGC 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 77, 428
BaeGI GKGCMC 1 cut(s) 350
BalI TGGCCA 1 cut(s) 314
BanII GRGCYC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 2 cut(s) 392, 433
BccI CCATC 3 cut(s) 56, 155, 511
BceAI ACGGC 1 cut(s) 505
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BcoDI GTCTC 2 cut(s) 137, 221
BfaI CTAG 3 cut(s) 62, 480, 561
BfuAI ACCTGC 1 cut(s) 556
BisI GCNGC 4 cut(s) 381, 422, 474, 519
BlsI GCNGC 4 cut(s) 382, 423, 475, 520
BmiI GGNNCC 1 cut(s) 493
BmsI GCATC 2 cut(s) 277, 560
BpmI CTGGAG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse3DI GCAATG 1 cut(s) 354
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 535
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 317, 449
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 2 cut(s) 392, 433
BsgI GTGCAG 2 cut(s) 202, 263
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 314, 473
BsiHKAI GWGCWC 1 cut(s) 464
BslI CCNNNNNNNGG 1 cut(s) 535
BsmAI GTCTC 2 cut(s) 137, 221
BsnI GGCC 2 cut(s) 314, 473
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 350, 464
Bsp143I GATC 3 cut(s) 232, 406, 447
BspACI CCGC 3 cut(s) 5, 474, 518
BspANI GGCC 2 cut(s) 314, 473
BspCNI CTCAG 2 cut(s) 316, 450
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 556
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 354
BssMI GATC 3 cut(s) 232, 406, 447
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 242, 246, 516
BstDEI CTNAG 2 cut(s) 303, 458
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 3 cut(s) 235, 409, 450
BstMAI GTCTC 2 cut(s) 137, 221
BstMBI GATC 3 cut(s) 232, 406, 447
BstNSI RCATGY 1 cut(s) 518
BstSLI GKGCMC 1 cut(s) 350
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 392, 433
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuRI GGCC 2 cut(s) 314, 473
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 3 cut(s) 242, 246, 516
CfoI GCGC 1 cut(s) 454
CviAII CATG 5 cut(s) 53, 148, 310, 445, 515
DdeI CTNAG 2 cut(s) 303, 458
DpnI GATC 3 cut(s) 234, 408, 449
DpnII GATC 3 cut(s) 232, 406, 447
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 464
Eco31I GGTCTC 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 516
EcoICRI GAGCTC 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 464
FaeI CATG 5 cut(s) 56, 151, 313, 448, 518
FatI CATG 5 cut(s) 52, 147, 309, 444, 514
Fnu4HI GCNGC 4 cut(s) 381, 422, 474, 519
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 4 cut(s) 381, 422, 474, 519
FspBI CTAG 3 cut(s) 62, 480, 561
GlaI GCGC 1 cut(s) 453
GluI GCNGC 4 cut(s) 381, 422, 474, 519
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 2 cut(s) 314, 473
HhaI GCGC 1 cut(s) 454
Hin1II CATG 5 cut(s) 56, 151, 313, 448, 518
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HphI GGTGA 2 cut(s) 77, 428
Hpy188I TCNGA 4 cut(s) 193, 286, 459, 535
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 49, 540
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4V TGCA 6 cut(s) 56, 104, 183, 244, 514, 551
HpyF3I CTNAG 2 cut(s) 303, 458
Hsp92II CATG 5 cut(s) 56, 151, 313, 448, 518
HspAI GCGC 1 cut(s) 452
Kzo9I GATC 3 cut(s) 232, 406, 447
LmnI GCTCC 3 cut(s) 334, 497, 562
LpnPI CCDG 7 cut(s) 108, 169, 230, 369, 450, 492, 561
Lsp1109I GCAGC 2 cut(s) 392, 433
LweI GCATC 2 cut(s) 277, 560
MaeI CTAG 3 cut(s) 62, 480, 561
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 234, 408, 449
MboI GATC 3 cut(s) 232, 406, 447
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 2 cut(s) 350, 464
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 1 cut(s) 497
MluNI TGGCCA 1 cut(s) 314
Mox20I TGGCCA 1 cut(s) 314
MscI TGGCCA 1 cut(s) 314
Msp20I TGGCCA 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 383
MvnI CGCG 1 cut(s) 452
NdeII GATC 3 cut(s) 232, 406, 447
NlaIII CATG 5 cut(s) 56, 151, 313, 448, 518
NlaIV GGNNCC 1 cut(s) 493
NspI RCATGY 1 cut(s) 518
PaeI GCATGC 1 cut(s) 518
PflFI GACNNNGTC 1 cut(s) 148
PkrI GCNGC 4 cut(s) 382, 423, 475, 520
Psp124BI GAGCTC 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 493
PsyI GACNNNGTC 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 464
SatI GCNGC 4 cut(s) 381, 422, 474, 519
Sau3AI GATC 3 cut(s) 232, 406, 447
SduI GDGCHC 2 cut(s) 350, 464
SetI ASST 7 cut(s) 67, 134, 321, 366, 385, 464, 550
SfaNI GCATC 2 cut(s) 277, 560
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SphI GCATGC 1 cut(s) 518
Sse9I AATT 1 cut(s) 497
SsiI CCGC 3 cut(s) 5, 474, 518
SspMI CTAG 3 cut(s) 62, 480, 561
SstI GAGCTC 1 cut(s) 464
TaaI ACNGT 1 cut(s) 440
TasI AATT 1 cut(s) 497
TauI GCSGC 2 cut(s) 476, 521
TscAI CASTG 1 cut(s) 185
TseI GCWGC 2 cut(s) 380, 421
TspDTI ATGAA 1 cut(s) 298
TspRI CASTG 1 cut(s) 185
Tth111I GACNNNGTC 1 cut(s) 148
XceI RCATGY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XspI CTAG 3 cut(s) 62, 480, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.