RchiOBHm_Chr3g0464231

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007418
Physical Location & Seq
Forward (+)
11387794 .. 11388978
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43051

Sequence Viewer

Length: 582 bp
ATGGATAAACAGTGCAGGACATCTGAAGTTGTGGTAGATAAGATGGCTGAATACATAGAGACAGATGAATGTGTGAAGGCATGTGGTGTTGATAGGGATGCTGTTGGTATTTCCTCTGATGCCTTCCTTGAGCCTCACTTCCTCAACAAGCTATGCACCCGCGACTGCTATGAGAAGTGCTCCAACCTTGTCGAACTTTACTTGAACTTGGCCGCCGGAGAAGGAGTGTTCTTGCCTTACCTATGTGTGAGACAACGTTCGGAACCTCACCGTACCAAGAGTTCTAGCGCTGTCTCTGGCCCTGCTTCAGAACAAGTAGAAGCAGGAGGAGGACCAATCACGAAACTTGTACAAAGCGTTTGCCTATGCATCTGTATACTAAACACGCTCTCCGGTTTTCTTCAAATCATTTCCTTTCAAATATTAGTGACAGGAATGAATTTTGTGGGAAAAAAACAAGGGAGGAATACTAGTAAAATTAGGGCAACCGGGAAAGTGGGTTCTCAATTACTTTTTCACACGTATCAATCGTATATGTCTTCTCCAAATTCTTATATTTTGCAATGGAGTACGTACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

193

Amino Acids

21.26

Weight (kDa)

7.48

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 4 - 105 3.4e-43 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 376
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 160, 213
AclI AACGTT 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 2 cut(s) 439, 547
AcuI CTGAAG 2 cut(s) 45, 291
AfaI GTAC 4 cut(s) 274, 351, 571, 575
AfeI AGCGCT 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 3 cut(s) 205, 404, 419
AhlI ACTAGT 1 cut(s) 470
AloI GAACNNNNNNTCC 2 cut(s) 484, 516
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 3 cut(s) 53, 244, 298
Aor51HI AGCGCT 1 cut(s) 289
AoxI GGCC 2 cut(s) 210, 298
ApoI RAATTY 2 cut(s) 439, 547
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 299, 332
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 182
BccI CCATC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 3 cut(s) 53, 244, 298
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 2 cut(s) 285, 471
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 490
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 299, 332
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 490
BmsI GCATC 3 cut(s) 88, 109, 378
BpiI GAAGAC 1 cut(s) 531
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 490
BsaAI YACGTR 2 cut(s) 522, 573
BsaWI WCCGGW 1 cut(s) 392
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 374, 404
Bse3DI GCAATG 1 cut(s) 569
BseGI GGATG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 569
BseRI GAGGAG 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 212, 300
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 3 cut(s) 216, 393, 489
BsmAI GTCTC 3 cut(s) 53, 244, 298
BsnI GGCC 2 cut(s) 212, 300
Bsp1286I GDGCHC 1 cut(s) 182
Bsp1407I TGTACA 1 cut(s) 349
BspACI CCGC 2 cut(s) 160, 213
BspANI GGCC 2 cut(s) 212, 300
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 569
BsrGI TGTACA 1 cut(s) 349
BssNAI GTATAC 1 cut(s) 377
Bst1107I GTATAC 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 12, 272
BstAUI TGTACA 1 cut(s) 349
BstBAI YACGTR 2 cut(s) 522, 573
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstMAI GTCTC 3 cut(s) 53, 244, 298
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 488
BstSNI TACGTA 1 cut(s) 573
BstUI CGCG 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 531
BstZ17I GTATAC 1 cut(s) 377
BsuRI GGCC 2 cut(s) 212, 300
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 299, 332
Csp6I GTAC 4 cut(s) 273, 350, 570, 574
CviAII CATG 1 cut(s) 81
CviJI RGCY 5 cut(s) 47, 133, 151, 212, 300
CviKI_1 RGCY 5 cut(s) 47, 133, 151, 212, 300
CviQI GTAC 4 cut(s) 273, 350, 570, 574
EaeI YGGCCR 1 cut(s) 210
Eco105I TACGTA 1 cut(s) 573
Eco47I GGWCC 1 cut(s) 332
Eco47III AGCGCT 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 45, 291
EcoT22I ATGCAT 1 cut(s) 371
FaeI CATG 1 cut(s) 84
FatI CATG 1 cut(s) 80
FauI CCCGC 1 cut(s) 167
FblI GTMKAC 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 285, 471
GlaI GCGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 2 cut(s) 212, 300
HapII CCGG 3 cut(s) 216, 393, 489
HhaI GCGC 1 cut(s) 290
Hin1II CATG 1 cut(s) 84
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HpaII CCGG 3 cut(s) 216, 393, 489
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 4 cut(s) 25, 118, 262, 310
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 70, 133, 215
HpyCH4III ACNGT 2 cut(s) 12, 272
HpyCH4IV ACGT 3 cut(s) 256, 521, 572
HpyCH4V TGCA 4 cut(s) 15, 156, 369, 562
HpySE526I ACGT 3 cut(s) 256, 521, 572
Hsp92II CATG 1 cut(s) 84
HspAI GCGC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 7 cut(s) 229, 282, 309, 315, 406, 417, 502
LweI GCATC 3 cut(s) 88, 109, 378
MaeI CTAG 2 cut(s) 285, 471
MaeII ACGT 3 cut(s) 256, 521, 572
MaeIII GTNAC 1 cut(s) 427
MboII GAAGA 2 cut(s) 392, 531
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 4 cut(s) 439, 477, 506, 547
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 7 cut(s) 124, 144, 152, 276, 320, 323, 456
Mph1103I ATGCAT 1 cut(s) 371
MspI CCGG 3 cut(s) 216, 393, 489
MspR9I CCNGG 1 cut(s) 490
MvnI CGCG 1 cut(s) 162
NciI CCSGG 1 cut(s) 490
NlaIII CATG 1 cut(s) 84
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 371
NspI RCATGY 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PkrI GCNGC 1 cut(s) 214
Ppu21I YACGTR 2 cut(s) 522, 573
Psp1406I AACGTT 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 2 cut(s) 299, 332
PsrI GAACNNNNNNTAC 2 cut(s) 265, 297
RsaI GTAC 4 cut(s) 274, 351, 571, 575
RsaNI GTAC 4 cut(s) 273, 350, 570, 574
SatI GCNGC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 299, 332
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 1 cut(s) 182
SetI ASST 7 cut(s) 153, 189, 243, 259, 268, 524, 575
SfaNI GCATC 3 cut(s) 88, 109, 378
SinI GGWCC 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SnaBI TACGTA 1 cut(s) 573
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 4 cut(s) 439, 477, 506, 547
SsiI CCGC 2 cut(s) 160, 213
SspI AATATT 1 cut(s) 423
SspMI CTAG 2 cut(s) 285, 471
StyD4I CCNGG 1 cut(s) 488
TaaI ACNGT 2 cut(s) 12, 272
TaiI ACGT 3 cut(s) 259, 524, 575
TaqI TCGA 1 cut(s) 192
TasI AATT 4 cut(s) 439, 477, 506, 547
TatI WGTACW 1 cut(s) 349
TauI GCSGC 1 cut(s) 215
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 81, 452
TspRI CASTG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 2 cut(s) 439, 547
XceI RCATGY 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 376
XspI CTAG 2 cut(s) 285, 471
Zsp2I ATGCAT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.