Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007811.1

Orthogroup ID

OG0007418

Physical Location & Seq

Genomic Coordinates Reverse (-)

57233 .. 58349

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007811.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggataaacagtgcaggacatctgaagttgtggtagataagatggctgaatacatagagacagatgaatgtgtgaaggcatgtggtgttgatagggatgctgttggagtgttcttgccttacctatgtgtgagacaacgttcggaacctcaccgtaccaagagttctagcgctgtctctggccctgcttcagaacaagtagaagcaggagacagtgctatggccccctggtcctggatcagaggaccaatcaccaaacttgtacaaaagcgtttgcctatgcatctgtatactaaacacgctctccggttttcttcaaatcatttcctttcaaatattagtgacaggaatgaattttgtgggaaaaaaacaagggaggaatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAR1

Protein Analysis

128

Amino Acids

14.53

Weight (kDa)

8.29

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54040 AT3G54040
fragaria_vesca	FvH4_6g12390 FvH4_6g12390
malus_domestica	MD04G1143000.v1.1 MD04G1143100.v1.1 MD12G1157300.v1.1
prunus_persica	Prupe.6G267800_v2.0.a1
pyrus_communis	pycom12g14960
rosa_chinensis	RchiOBHm_Chr3g0464221 RchiOBHm_Chr3g0464231
rosa_laevigata	RLG00000024715
rosa_multiflora	Rmu_sc0006492.1_g000025 Rmu_sc0007811.1_g000010 Rmu_sc0007811.1_g000011
rosa_roxburghii	Rroxscaffold_6G00415930
rosa_rugosa	Rorug03G0070900 Rorug06G0012300
rosa_samantha	Rh3BG132600 Rh3BG132700 Rh3CG134900 Rh3CG135000 Rh3DG134000 Rh3DG134100
rosa_wichuraiana	Rw3G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	290
AclI	AACGTT	1 cut(s)	139
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	2 cut(s)	45, 174
AfaI	GTAC	2 cut(s)	157, 264
AfeI	AGCGCT	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	318, 333
AjnI	CCWGG	2 cut(s)	227, 233
Alw26I	GTCTC	4 cut(s)	53, 127, 181, 204
AlwI	GGATC	1 cut(s)	245
Aor51HI	AGCGCT	1 cut(s)	172
AoxI	GGCC	2 cut(s)	181, 222
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	4 cut(s)	182, 223, 231, 245
AsuHPI	GGTGA	2 cut(s)	143, 244
AvaII	GGWCC	2 cut(s)	231, 245
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	229, 235
BcoDI	GTCTC	4 cut(s)	53, 127, 181, 204
BfaI	CTAG	2 cut(s)	168, 385
BfoI	RGCGCY	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	229, 235
Bme18I	GGWCC	2 cut(s)	231, 245
BmgT120I	GGNCC	4 cut(s)	182, 223, 231, 245
BmiI	GGNNCC	2 cut(s)	147, 225
BmrFI	CCNGG	2 cut(s)	229, 235
BmsI	GCATC	2 cut(s)	88, 292
BsaJI	CCNNGG	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	229, 235
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	183, 224
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	4 cut(s)	53, 127, 181, 204
BsnI	GGCC	2 cut(s)	183, 224
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	183, 224
BspLI	GGNNCC	2 cut(s)	147, 225
BspPI	GGATC	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	237
BssNAI	GTATAC	1 cut(s)	291
Bst1107I	GTATAC	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	229, 235
Bst4CI	ACNGT	3 cut(s)	12, 155, 215
BstAUI	TGTACA	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	4 cut(s)	53, 127, 181, 204
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	229, 235
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	227, 233
BstZ17I	GTATAC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	183, 224
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	17, 220
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	4 cut(s)	182, 223, 231, 245
Csp6I	GTAC	2 cut(s)	156, 263
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	3 cut(s)	47, 183, 224
CviKI_1	RGCY	3 cut(s)	47, 183, 224
CviQI	GTAC	2 cut(s)	156, 263
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	231, 245
Eco47III	AGCGCT	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	45, 174
EcoRII	CCWGG	2 cut(s)	227, 233
EcoT22I	ATGCAT	1 cut(s)	285
FaeI	CATG	1 cut(s)	84
FaiI	YATR	6 cut(s)	56, 82, 127, 221, 281, 291
FatI	CATG	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	290
FokI	GGATG	1 cut(s)	110
FspBI	CTAG	2 cut(s)	168, 385
GlaI	GCGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	183, 224
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	143, 244
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	4 cut(s)	25, 145, 193, 242
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	3 cut(s)	12, 155, 215
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	15, 283
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	84
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	9 cut(s)	165, 192, 198, 214, 220, 241, 247, 320, 331
LweI	GCATC	2 cut(s)	88, 292
MaeI	CTAG	2 cut(s)	168, 385
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	306
MluCI	AATT	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	3 cut(s)	159, 236, 370
Mph1103I	ATGCAT	1 cut(s)	285
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	229, 235
MvaI	CCWGG	2 cut(s)	229, 235
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	1 cut(s)	84
NlaIV	GGNNCC	2 cut(s)	147, 225
NmuCI	GTSAC	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	233
Psp1406I	AACGTT	1 cut(s)	139
Psp6I	CCWGG	2 cut(s)	227, 233
PspGI	CCWGG	2 cut(s)	227, 233
PspN4I	GGNNCC	2 cut(s)	147, 225
PspPI	GGNCC	4 cut(s)	182, 223, 231, 245
PsrI	GAACNNNNNNTAC	2 cut(s)	148, 180
RsaI	GTAC	2 cut(s)	157, 264
RsaNI	GTAC	2 cut(s)	156, 263
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	4 cut(s)	182, 223, 231, 245
ScrFI	CCNGG	2 cut(s)	229, 235
SetI	ASST	3 cut(s)	126, 142, 151
SfaNI	GCATC	2 cut(s)	88, 292
SinI	GGWCC	2 cut(s)	231, 245
Sse9I	AATT	1 cut(s)	353
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	168, 385
StyD4I	CCNGG	2 cut(s)	227, 233
TaaI	ACNGT	3 cut(s)	12, 155, 215
TaiI	ACGT	1 cut(s)	142
TasI	AATT	1 cut(s)	353
TatI	WGTACW	1 cut(s)	262
TscAI	CASTG	2 cut(s)	17, 220
TseFI	GTSAC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	81, 366
TspRI	CASTG	2 cut(s)	17, 220
VpaK11BI	GGWCC	2 cut(s)	231, 245
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	2 cut(s)	168, 385
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.