Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007811.1

Orthogroup ID

OG0007418

Physical Location & Seq

Genomic Coordinates Reverse (-)

61767 .. 62789

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007811.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggcggccaagcttccattggttctcttcctctcctccctcttcatccatgcagctctagctgcttttgtatgtgaggatttgccaaatgatgtttgcgcattttcggtgtcatctgccgggaaaagatgtttaatcgagacaatggcaaagaacgatggaagcgtagagtaccagtgcaggacatcagagattgtggttgagggtttggccgagtacatggagacagatgagtgtgtgaatgcttgcggtgttgatagaaagtccgtcggaatttcctccgatgcccttcttgagcctcagtttatggggaagctttgctctcccaactgttaccagaagtgccccaacattgttgaactttacttcaacttggctgccggagagggagtgttcttgcctgatctgtgtgagagacaacgatccaaccctcgccgtgccatgattgaactgatgagctccggcgatgcagcccctggtcctatttcatcagaagacatacatgccgcccctggccccgcttcagattacttccccgcttcttcccctgttccttctcctgctcctttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAR1

Protein Analysis

190

Amino Acids

20.29

Weight (kDa)

4.52

Isoelectric Point (pI)

65.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54040 AT3G54040
fragaria_vesca	FvH4_6g12390 FvH4_6g12390
malus_domestica	MD04G1143000.v1.1 MD04G1143100.v1.1 MD12G1157300.v1.1
prunus_persica	Prupe.6G267800_v2.0.a1
pyrus_communis	pycom12g14960
rosa_chinensis	RchiOBHm_Chr3g0464221 RchiOBHm_Chr3g0464231
rosa_laevigata	RLG00000024715
rosa_multiflora	Rmu_sc0006492.1_g000025 Rmu_sc0007811.1_g000010 Rmu_sc0007811.1_g000011
rosa_roxburghii	Rroxscaffold_6G00415930
rosa_rugosa	Rorug03G0070900 Rorug06G0012300
rosa_samantha	Rh3BG132600 Rh3BG132700 Rh3CG134900 Rh3CG135000 Rh3DG134000 Rh3DG134100
rosa_wichuraiana	Rw3G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	100
AciI	CCGC	5 cut(s)	5, 249, 507, 519, 537
AclWI	GGATC	1 cut(s)	417
AcoI	YGGCCR	2 cut(s)	6, 210
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	2 cut(s)	173, 218
AgsI	TTSAA	3 cut(s)	359, 370, 449
AjnI	CCWGG	2 cut(s)	475, 511
AluBI	AGCT	5 cut(s)	13, 56, 62, 316, 459
AluI	AGCT	5 cut(s)	13, 56, 62, 316, 459
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	3 cut(s)	134, 218, 409
AlwI	GGATC	1 cut(s)	417
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	3 cut(s)	6, 210, 514
ApeKI	GCWGC	4 cut(s)	53, 62, 377, 470
ApoI	RAATTY	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	479, 515
AsuC2I	CCSGG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	4 cut(s)	49, 65, 364, 482
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	2 cut(s)	477, 513
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	134, 218, 409
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
BlsI	GCNGC	6 cut(s)	7, 55, 64, 379, 472, 508
Bme1390I	CCNGG	3 cut(s)	121, 477, 513
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	479, 515
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	3 cut(s)	121, 477, 513
BmsI	GCATC	2 cut(s)	274, 457
BpiI	GAAGAC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	475, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	477, 513
BseDI	CCNNGG	2 cut(s)	475, 511
BseGI	GGATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	347
BseXI	GCAGC	4 cut(s)	49, 65, 364, 482
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	3 cut(s)	8, 212, 516
BsiHKAI	GWGCWC	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	120, 381, 462
BsmAI	GTCTC	3 cut(s)	134, 218, 409
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	3 cut(s)	8, 212, 516
Bsp1286I	GDGCHC	2 cut(s)	347, 461
Bsp143I	GATC	2 cut(s)	403, 422
BspACI	CCGC	5 cut(s)	5, 249, 507, 519, 537
BspANI	GGCC	3 cut(s)	8, 212, 516
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	475, 511
BssMI	GATC	2 cut(s)	403, 422
Bst2UI	CCWGG	2 cut(s)	477, 513
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	32, 47
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	2 cut(s)	406, 425
BstMAI	GTCTC	3 cut(s)	134, 218, 409
BstMBI	GATC	2 cut(s)	403, 422
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 62
BstNI	CCWGG	2 cut(s)	477, 513
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	3 cut(s)	119, 475, 511
BstSLI	GKGCMC	1 cut(s)	347
BstV1I	GCAGC	4 cut(s)	49, 65, 364, 482
BstV2I	GAAGAC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	8, 212, 516
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	476
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	479, 515
Csp6I	GTAC	2 cut(s)	172, 217
CviAII	CATG	4 cut(s)	50, 220, 442, 503
CviQI	GTAC	2 cut(s)	172, 217
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	2 cut(s)	405, 424
DpnII	GATC	2 cut(s)	403, 422
EaeI	YGGCCR	2 cut(s)	6, 210
Eam1104I	CTCTTC	2 cut(s)	32, 47
EarI	CTCTTC	2 cut(s)	32, 47
Ecl136II	GAGCTC	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	461
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	475, 511
EcoT38I	GRGCYC	1 cut(s)	461
FaeI	CATG	4 cut(s)	53, 223, 445, 506
FaiI	YATR	7 cut(s)	51, 73, 221, 308, 443, 500, 504
FatI	CATG	4 cut(s)	49, 219, 441, 502
FauI	CCCGC	2 cut(s)	526, 544
Fnu4HI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
FspBI	CTAG	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	100
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
HaeIII	GGCC	3 cut(s)	8, 212, 516
HapII	CCGG	3 cut(s)	120, 381, 462
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	4 cut(s)	53, 223, 445, 506
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HindIII	AAGCTT	2 cut(s)	11, 314
HpaII	CCGG	3 cut(s)	120, 381, 462
Hpy188I	TCNGA	5 cut(s)	190, 272, 283, 493, 526
Hpy188III	TCNNGA	2 cut(s)	139, 293
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	299, 564
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	53, 180, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 62
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	53, 223, 445, 506
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	403, 422
LmnI	GCTCC	2 cut(s)	464, 568
Lsp1109I	GCAGC	4 cut(s)	49, 65, 364, 482
LweI	GCATC	2 cut(s)	274, 457
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	2 cut(s)	405, 424
MboI	GATC	2 cut(s)	403, 422
MboII	GAAGA	4 cut(s)	19, 34, 506, 534
MhlI	GDGCHC	2 cut(s)	347, 461
MluCI	AATT	1 cut(s)	273
MmeI	TCCRAC	2 cut(s)	250, 450
MnlI	CCTC	9 cut(s)	41, 46, 50, 70, 196, 289, 309, 379, 441
MseI	TTAA	1 cut(s)	134
MspI	CCGG	3 cut(s)	120, 381, 462
MspR9I	CCNGG	3 cut(s)	121, 477, 513
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	2 cut(s)	477, 513
MwoI	GCNNNNNNNGC	2 cut(s)	59, 62
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	403, 422
NlaIII	CATG	4 cut(s)	53, 223, 445, 506
NlaIV	GGNNCC	1 cut(s)	517
NmeAIII	GCCGAG	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	100
NspI	RCATGY	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	247
PkrI	GCNGC	6 cut(s)	7, 55, 64, 379, 472, 508
Psp124BI	GAGCTC	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	475, 511
PspGI	CCWGG	2 cut(s)	475, 511
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	479, 515
PstNI	CAGNNNCTG	1 cut(s)	476
RsaI	GTAC	2 cut(s)	173, 218
RsaNI	GTAC	2 cut(s)	172, 217
SacI	GAGCTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	6 cut(s)	6, 54, 63, 378, 471, 507
Sau3AI	GATC	2 cut(s)	403, 422
Sau96I	GGNCC	2 cut(s)	479, 515
ScrFI	CCNGG	3 cut(s)	121, 477, 513
SduI	GDGCHC	2 cut(s)	347, 461
SetI	ASST	5 cut(s)	15, 58, 64, 318, 461
SfaNI	GCATC	2 cut(s)	274, 457
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	5 cut(s)	5, 249, 507, 519, 537
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	461
StyD4I	CCNGG	3 cut(s)	119, 475, 511
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	273
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	2 cut(s)	8, 509
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	4 cut(s)	53, 62, 377, 470
TspDTI	ATGAA	2 cut(s)	34, 477
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.