Rh3BG132700

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007418
Physical Location & Seq
Forward (+)
11190994 .. 11192127
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG132700.1

Sequence Viewer

Length: 354 bp
ATGGATAAACAGTGCAGGACATCTGAAGTTGTGGTAGATAAGATGGCTGAATACATAGAGACAGATGAATGTGTGAAGGCATGTGGTGTTGATAGGGATGCTGTTGGTATTTCCTCTGATGCCTTCCTTGAGCCTCACTTCCTCAACAAGCTATGCACCCGCGACTGCTATGAGAAGTGCTCCAACCTTGTCGAACTTTACTTGAACTTGGCCGCCGGAGAAGGAGTGTTCTTGCCTTACCTATGTGTGAGACAACGTTCGGAACCTCACCGTACCAAGAGTTCTAGCGCTGTCTCTGGCCCTGCTTCAGAACAAGTAGAAGCAGGAGGAGGACCAATCACGAAACTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

117

Amino Acids

12.81

Weight (kDa)

4.93

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 4 - 105 3.1e-44 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 160, 213
AclI AACGTT 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 2 cut(s) 45, 291
AfaI GTAC 1 cut(s) 274
AfeI AGCGCT 1 cut(s) 289
AgsI TTSAA 2 cut(s) 205, 350
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 3 cut(s) 53, 244, 298
Aor51HI AGCGCT 1 cut(s) 289
AoxI GGCC 2 cut(s) 210, 298
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 299, 332
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 182
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 3 cut(s) 53, 244, 298
BfaI CTAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 299, 332
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 2 cut(s) 88, 109
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuEI CTTGAG 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
BseGI GGATG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 212, 300
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 216
BsmAI GTCTC 3 cut(s) 53, 244, 298
BsnI GGCC 2 cut(s) 212, 300
Bsp1286I GDGCHC 1 cut(s) 182
BspACI CCGC 2 cut(s) 160, 213
BspANI GGCC 2 cut(s) 212, 300
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 12, 272
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstMAI GTCTC 3 cut(s) 53, 244, 298
BstNSI RCATGY 1 cut(s) 84
BstUI CGCG 1 cut(s) 162
BsuRI GGCC 2 cut(s) 212, 300
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 299, 332
Csp6I GTAC 1 cut(s) 273
CviAII CATG 1 cut(s) 81
CviJI RGCY 5 cut(s) 47, 133, 151, 212, 300
CviKI_1 RGCY 5 cut(s) 47, 133, 151, 212, 300
CviQI GTAC 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 332
Eco47III AGCGCT 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 45, 291
FaeI CATG 1 cut(s) 84
FaiI YATR 5 cut(s) 56, 82, 154, 171, 244
FatI CATG 1 cut(s) 80
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 2 cut(s) 212, 300
HapII CCGG 1 cut(s) 216
HhaI GCGC 1 cut(s) 290
Hin1II CATG 1 cut(s) 84
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HpaII CCGG 1 cut(s) 216
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 4 cut(s) 25, 118, 262, 310
Hpy188III TCNNGA 1 cut(s) 340
HpyAV CCTTC 3 cut(s) 70, 133, 215
HpyCH4III ACNGT 2 cut(s) 12, 272
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 15, 156
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 1 cut(s) 84
HspAI GCGC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 4 cut(s) 229, 282, 309, 315
LweI GCATC 2 cut(s) 88, 109
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 6 cut(s) 124, 144, 152, 276, 320, 323
MspI CCGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 162
NlaIII CATG 1 cut(s) 84
NlaIV GGNNCC 1 cut(s) 264
NspI RCATGY 1 cut(s) 84
PkrI GCNGC 1 cut(s) 214
Psp1406I AACGTT 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 2 cut(s) 299, 332
PsrI GAACNNNNNNTAC 2 cut(s) 265, 297
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SatI GCNGC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 299, 332
SduI GDGCHC 1 cut(s) 182
SetI ASST 5 cut(s) 153, 189, 243, 259, 268
SfaNI GCATC 2 cut(s) 88, 109
SinI GGWCC 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SsiI CCGC 2 cut(s) 160, 213
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 12, 272
TaiI ACGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 192
TauI GCSGC 1 cut(s) 215
TscAI CASTG 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 81
TspRI CASTG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 332
XceI RCATGY 1 cut(s) 84
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.