Rh3CG134900

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007418
Physical Location & Seq
Forward (+)
11037302 .. 11040237
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG134900.1

Sequence Viewer

Length: 432 bp
ATGGCAAAGAACGATGGAAGCGTAGAGTACCAGTGCAGGACATCAGAGATTGTGGTTGAGGGTTTGGCCGAGTACATGGAGACAGATGAGTGTGTGAATGCTTGCGGTGTTGATAGAAAGTCCGTCGGAATTTCCTCCGATGCCCTTCTTGAGCCTCAGTTTATGGGCAAGCTTTGCTCTCCCAACTGTTACCAGAAGTGCCCCAACATTGTTGAACTTTACTTCAACTTGGCTGCCGGAGAGGGAGTGTTCTTGCCTGATCTGTGTGAGAGACAACGATCCAACCCTCGCCGTGCCATGATTGAACTGATGAGCTCCGGCGATGCTGCCCCTGGTCCTATTTCATCAGAAGACATACATGCCGCCCCTGGCCCCTCTTCAGATTACTTCCCCGCTTCTTCCCCTGTTCCTTCTTCTCCTGCTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

143

Amino Acids

15.33

Weight (kDa)

4.39

Isoelectric Point (pI)

72.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 2 - 118 1.1e-58 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 105, 363, 393
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 2 cut(s) 29, 74
AgsI TTSAA 3 cut(s) 215, 226, 305
AjnI CCWGG 2 cut(s) 331, 367
AluBI AGCT 2 cut(s) 172, 315
AluI AGCT 2 cut(s) 172, 315
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 74, 265
AlwI GGATC 1 cut(s) 273
AoxI GGCC 2 cut(s) 66, 370
ApeKI GCWGC 2 cut(s) 233, 326
ApoI RAATTY 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 335, 371
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 220, 313
BccI CCATC 1 cut(s) 8
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 2 cut(s) 333, 369
BcoDI GTCTC 2 cut(s) 74, 265
BisI GCNGC 3 cut(s) 234, 327, 363
BlsI GCNGC 3 cut(s) 235, 328, 364
Bme1390I CCNGG 2 cut(s) 333, 369
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 2 cut(s) 335, 371
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 2 cut(s) 333, 369
BmsI GCATC 2 cut(s) 130, 313
BpiI GAAGAC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 331, 367
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 333, 369
BseDI CCNNGG 2 cut(s) 331, 367
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 2 cut(s) 220, 313
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 2 cut(s) 68, 372
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 2 cut(s) 237, 318
BsmAI GTCTC 2 cut(s) 74, 265
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 2 cut(s) 68, 372
Bsp1286I GDGCHC 2 cut(s) 203, 317
Bsp143I GATC 2 cut(s) 259, 278
BspACI CCGC 3 cut(s) 105, 363, 393
BspANI GGCC 2 cut(s) 68, 372
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 373
BspPI GGATC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 331, 367
BssMI GATC 2 cut(s) 259, 278
Bst2UI CCWGG 2 cut(s) 333, 369
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 103, 170
BstDEI CTNAG 1 cut(s) 156
BstKTI GATC 2 cut(s) 262, 281
BstMAI GTCTC 2 cut(s) 74, 265
BstMBI GATC 2 cut(s) 259, 278
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 2 cut(s) 333, 369
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 331, 367
BstSLI GKGCMC 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 220, 313
BstV2I GAAGAC 1 cut(s) 357
BsuRI GGCC 2 cut(s) 68, 372
BtgZI GCGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 103, 170
Cfr13I GGNCC 2 cut(s) 335, 371
Csp6I GTAC 2 cut(s) 28, 73
CviAII CATG 3 cut(s) 76, 298, 359
CviJI RGCY 6 cut(s) 68, 154, 172, 233, 315, 372
CviKI_1 RGCY 6 cut(s) 68, 154, 172, 233, 315, 372
CviQI GTAC 2 cut(s) 28, 73
DdeI CTNAG 1 cut(s) 156
DpnI GATC 2 cut(s) 261, 280
DpnII GATC 2 cut(s) 259, 278
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Ecl136II GAGCTC 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 331, 367
EcoT38I GRGCYC 1 cut(s) 317
FaeI CATG 3 cut(s) 79, 301, 362
FaiI YATR 5 cut(s) 77, 164, 299, 356, 360
FatI CATG 3 cut(s) 75, 297, 358
FauI CCCGC 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 234, 327, 363
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 234, 327, 363
GluI GCNGC 3 cut(s) 234, 327, 363
HaeIII GGCC 2 cut(s) 68, 372
HapII CCGG 2 cut(s) 237, 318
Hin1II CATG 3 cut(s) 79, 301, 362
HindIII AAGCTT 1 cut(s) 170
HpaII CCGG 2 cut(s) 237, 318
Hpy188I TCNGA 5 cut(s) 46, 128, 139, 349, 382
Hpy188III TCNNGA 1 cut(s) 149
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 155, 420
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 3 cut(s) 79, 301, 362
Kzo9I GATC 2 cut(s) 259, 278
LmnI GCTCC 2 cut(s) 320, 427
Lsp1109I GCAGC 2 cut(s) 220, 313
LweI GCATC 2 cut(s) 130, 313
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 261, 280
MboI GATC 2 cut(s) 259, 278
MboII GAAGA 4 cut(s) 362, 369, 390, 405
MhlI GDGCHC 2 cut(s) 203, 317
MluCI AATT 1 cut(s) 129
MmeI TCCRAC 2 cut(s) 106, 306
MnlI CCTC 6 cut(s) 52, 145, 165, 235, 297, 385
MspI CCGG 2 cut(s) 237, 318
MspR9I CCNGG 2 cut(s) 333, 369
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 2 cut(s) 333, 369
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 2 cut(s) 259, 278
NlaIII CATG 3 cut(s) 79, 301, 362
NlaIV GGNNCC 1 cut(s) 373
NmeAIII GCCGAG 1 cut(s) 94
NspI RCATGY 1 cut(s) 362
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 103
PkrI GCNGC 3 cut(s) 235, 328, 364
Psp124BI GAGCTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 331, 367
PspGI CCWGG 2 cut(s) 331, 367
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 2 cut(s) 335, 371
RsaI GTAC 2 cut(s) 29, 74
RsaNI GTAC 2 cut(s) 28, 73
SacI GAGCTC 1 cut(s) 317
SatI GCNGC 3 cut(s) 234, 327, 363
Sau3AI GATC 2 cut(s) 259, 278
Sau96I GGNCC 2 cut(s) 335, 371
ScrFI CCNGG 2 cut(s) 333, 369
SduI GDGCHC 2 cut(s) 203, 317
SetI ASST 2 cut(s) 174, 317
SfaNI GCATC 2 cut(s) 130, 313
SinI GGWCC 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 129
SsiI CCGC 3 cut(s) 105, 363, 393
SstI GAGCTC 1 cut(s) 317
StyD4I CCNGG 2 cut(s) 331, 367
TaaI ACNGT 1 cut(s) 188
TasI AATT 1 cut(s) 129
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 365
TscAI CASTG 1 cut(s) 38
TseI GCWGC 2 cut(s) 233, 326
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 1 cut(s) 129
XceI RCATGY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.