Rh3DG134000

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0007418
Physical Location & Seq
Forward (+)
11386034 .. 11388969
2936 bp
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UTR
Exon/CDS
Intron
Rh3DG134000.1

Sequence Viewer

Length: 453 bp
ATGGCGACCAAGCTTCCATTGGTTCTCTTCCTCTCCTCCCTCTTCATCCATGCAGCTCTAGCTGCTTTTGTATGTGAGGATTTGCCAAATGATGTTTGCGCATTTTCGGTGTCATCTGCCGGGAAAAGATGTTTAATCGAGACAATGGCAAAGAACGATGGAAGCGTAGAGTACCAGTGCAGGACATCAGAGATTGTGGTTGAGGGTTTGGCCGAGTACATGGAGACAGATGAGTGTGTGAATGCTTGCGGTGTTGATAGAAAGTCCGTCGGAATTTCCTCCGATGCCCTTCTTGAGCCTCAGTTTATGGGCAAGCTTTGCTCTCCCAACTGTTACCAGAAGTGCCCCAACATTGTTGAACTTTACTTCAACTTGGCTGCCGGAGAGGGTAAGTTACCTAATTCACAACATATTAAATATAAAACATTCCCATCCTTGGGACCCAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

150

Amino Acids

16.31

Weight (kDa)

5.15

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 24 - 131 5.2e-57 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 100
AciI CCGC 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 2 cut(s) 173, 218
AfiI CCNNNNNNNGG 2 cut(s) 436, 437
AgsI TTSAA 2 cut(s) 359, 370
AluBI AGCT 4 cut(s) 13, 56, 62, 316
AluI AGCT 4 cut(s) 13, 56, 62, 316
Alw26I GTCTC 2 cut(s) 134, 218
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 53, 62, 377
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 1 cut(s) 121
AvaII GGWCC 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 347
BbvI GCAGC 3 cut(s) 49, 65, 364
BccI CCATC 2 cut(s) 152, 439
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 134, 218
BfaI CTAG 1 cut(s) 59
BisI GCNGC 3 cut(s) 54, 63, 378
BlsI GCNGC 3 cut(s) 55, 64, 379
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 2 cut(s) 441, 442
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 435
Bsc4I CCNNNNNNNGG 2 cut(s) 436, 437
Bse1I ACTGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 2 cut(s) 45, 431
BseLI CCNNNNNNNGG 2 cut(s) 436, 437
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 347
BseXI GCAGC 3 cut(s) 49, 65, 364
BsgI GTGCAG 1 cut(s) 199
BshFI GGCC 1 cut(s) 212
BsiSI CCGG 2 cut(s) 120, 381
BslI CCNNNNNNNGG 2 cut(s) 436, 437
BsmAI GTCTC 2 cut(s) 134, 218
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 347
BspACI CCGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 441, 442
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 2 cut(s) 32, 47
BstAPI GCANNNNNTGC 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 247, 314
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 45, 431
BstHHI GCGC 1 cut(s) 101
BstMAI GTCTC 2 cut(s) 134, 218
BstMWI GCNNNNNNNGC 3 cut(s) 59, 62, 318
BstSCI CCNGG 1 cut(s) 119
BstSLI GKGCMC 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 49, 65, 364
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 45, 431
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 247, 314
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 172, 217
CviAII CATG 2 cut(s) 50, 220
CviJI RGCY 7 cut(s) 13, 56, 62, 212, 298, 316, 377
CviKI_1 RGCY 7 cut(s) 13, 56, 62, 212, 298, 316, 377
CviQI GTAC 2 cut(s) 172, 217
DdeI CTNAG 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 32, 47
EarI CTCTTC 2 cut(s) 32, 47
Eco130I CCWWGG 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 440
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 2 cut(s) 53, 223
FaiI YATR 6 cut(s) 51, 73, 221, 308, 411, 420
FatI CATG 2 cut(s) 49, 219
Fnu4HI GCNGC 3 cut(s) 54, 63, 378
FokI GGATG 2 cut(s) 32, 418
Fsp4HI GCNGC 3 cut(s) 54, 63, 378
FspBI CTAG 1 cut(s) 59
FspI TGCGCA 1 cut(s) 100
GlaI GCGC 1 cut(s) 100
GluI GCNGC 3 cut(s) 54, 63, 378
HaeIII GGCC 1 cut(s) 212
HapII CCGG 2 cut(s) 120, 381
HhaI GCGC 1 cut(s) 101
Hin1II CATG 2 cut(s) 53, 223
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HindIII AAGCTT 2 cut(s) 11, 314
HpaII CCGG 2 cut(s) 120, 381
Hpy188I TCNGA 3 cut(s) 190, 272, 283
Hpy188III TCNNGA 2 cut(s) 139, 293
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 53, 180
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 62, 318
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 2 cut(s) 53, 223
HspAI GCGC 1 cut(s) 99
KflI GGGWCCC 1 cut(s) 440
LpnPI CCDG 5 cut(s) 133, 166, 188, 350, 394
Lsp1109I GCAGC 3 cut(s) 49, 65, 364
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 332, 393
MboII GAAGA 2 cut(s) 19, 34
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 2 cut(s) 273, 400
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 8 cut(s) 41, 46, 50, 70, 196, 289, 309, 379
MseI TTAA 2 cut(s) 134, 414
MspI CCGG 2 cut(s) 120, 381
MspR9I CCNGG 1 cut(s) 121
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 3 cut(s) 59, 62, 318
NciI CCSGG 1 cut(s) 121
NlaIII CATG 2 cut(s) 53, 223
NlaIV GGNNCC 2 cut(s) 441, 442
NmeAIII GCCGAG 1 cut(s) 238
NsbI TGCGCA 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 1 cut(s) 247
PkrI GCNGC 3 cut(s) 55, 64, 379
PpuMI RGGWCCY 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 441, 442
PspPI GGNCC 1 cut(s) 440
PspPPI RGGWCCY 1 cut(s) 440
RsaI GTAC 2 cut(s) 173, 218
RsaNI GTAC 2 cut(s) 172, 217
SaqAI TTAA 2 cut(s) 134, 414
SatI GCNGC 3 cut(s) 54, 63, 378
Sau96I GGNCC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 347
SetI ASST 5 cut(s) 15, 58, 64, 318, 400
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 2 cut(s) 273, 400
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 273, 400
TatI WGTACW 1 cut(s) 216
Tru1I TTAA 2 cut(s) 134, 414
Tru9I TTAA 2 cut(s) 134, 414
TscAI CASTG 1 cut(s) 182
TseI GCWGC 3 cut(s) 53, 62, 377
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.