Prupe.6G267800_v2.0.a1

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0007418
Physical Location & Seq
Reverse (-)
25559118 .. 25560721
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G267800.1

Sequence Viewer

Length: 588 bp
ATGGCTTTGATCTCCACCAAGTTTTCTTTGGCTCTCTTCCTCTCTTCCCTCTGCATCCATGCAGTTCTAGGTGGGTTTATATGTGAGGATTTGCCAAATGATGTTTGCGCATTTTCGGTATCGTCTGCCGGGAAAAGGTGTCTGCTAGAGACCATGGCAAAGAAGGATGGAAGCATAGAGTACCAATGCAGGACATCAGAAGTTTTGGTTCAGGGGGTGGCAGAGTACATTGAGACAGATCAGTGTGTGAAGGCTTGTGGCATTGACAGGAAGTCTGTAGGGATTTCATCTGATGCCCTCCTTGAGCCTCAGTTCATGACCAAGCTCTGCTCCCCAACTTGCTACCAAAAGTGCCCCAACATTGTTGAGCTTTACTTCAACTTGGCCGCCGGAGAGGGAGCGTTCTTGCCGGATCTCTGCGACAAACAGCGTACCAACCCTCACCGTGCCATGCTCCAGCTCTTGAGCTCTGGTGAGGCCGTCGCTGGCCCCGTCAGCAGCAAATCACCATCAGGAAACTTGGCATTTGCCCCTTCTCAGGAAGAAGCGTATCCCCCTTCTGAGGCATTTGCCCCTGCTCCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

196

Amino Acids

20.81

Weight (kDa)

4.93

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 109
AciI CCGC 1 cut(s) 387
AclWI GGATC 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 384
AfaI GTAC 3 cut(s) 182, 227, 433
AfiI CCNNNNNNNGG 3 cut(s) 135, 538, 562
AgsI TTSAA 1 cut(s) 379
AhdI GACNNNNNGTC 1 cut(s) 271
AluBI AGCT 4 cut(s) 325, 370, 460, 468
AluI AGCT 4 cut(s) 325, 370, 460, 468
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 2 cut(s) 143, 227
AlwI GGATC 1 cut(s) 420
AoxI GGCC 3 cut(s) 384, 477, 487
ApeKI GCWGC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 488
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 434, 485, 498
BaeGI GKGCMC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 510
BccI CCATC 2 cut(s) 161, 517
BceAI ACGGC 1 cut(s) 464
BciVI GTATCC 1 cut(s) 561
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 143, 227
BfaI CTAG 2 cut(s) 68, 146
BfmI CTRYAG 1 cut(s) 276
BfuI GTATCC 1 cut(s) 561
BisI GCNGC 2 cut(s) 387, 499
BlsI GCNGC 2 cut(s) 388, 500
Bme1390I CCNGG 1 cut(s) 130
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 63, 283
BpmI CTGGAG 1 cut(s) 440
BpuEI CTTGAG 2 cut(s) 323, 484
BpuMI CCSGG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 538, 562
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 54, 172
BseLI CCNNNNNNNGG 3 cut(s) 135, 538, 562
BseMII CTCAG 3 cut(s) 323, 551, 552
BseRI GAGGAG 1 cut(s) 570
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 1 cut(s) 510
BshFI GGCC 3 cut(s) 386, 479, 489
BsiHKAI GWGCWC 1 cut(s) 470
BsiSI CCGG 3 cut(s) 129, 390, 410
BslI CCNNNNNNNGG 3 cut(s) 135, 538, 562
BsmAI GTCTC 2 cut(s) 143, 227
BsnI GGCC 3 cut(s) 386, 479, 489
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 356, 470
Bsp143I GATC 3 cut(s) 9, 238, 412
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 387
BspANI GGCC 3 cut(s) 386, 479, 489
BspCNI CTCAG 3 cut(s) 322, 550, 553
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 490
BspPI GGATC 1 cut(s) 420
BspTNI GGTCTC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 3 cut(s) 9, 238, 412
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 2 cut(s) 41, 49
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 3 cut(s) 309, 537, 561
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 54, 172
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 3 cut(s) 12, 241, 415
BstMAI GTCTC 2 cut(s) 143, 227
BstMBI GATC 3 cut(s) 9, 238, 412
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuI GTATCC 1 cut(s) 561
BsuRI GGCC 3 cut(s) 386, 479, 489
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 54, 172
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 487
CciI TCATGA 1 cut(s) 315
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 3 cut(s) 181, 226, 432
CviAII CATG 4 cut(s) 59, 154, 316, 451
CviQI GTAC 3 cut(s) 181, 226, 432
DdeI CTNAG 3 cut(s) 309, 537, 561
DpnI GATC 3 cut(s) 11, 240, 414
DpnII GATC 3 cut(s) 9, 238, 412
DriI GACNNNNNGTC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 2 cut(s) 41, 49
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 2 cut(s) 41, 49
Ecl136II GAGCTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 470
Eco31I GGTCTC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 468
EcoICRI GAGCTC 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 62, 157, 319, 454
FaiI YATR 7 cut(s) 60, 80, 82, 155, 176, 317, 452
FatI CATG 4 cut(s) 58, 153, 315, 450
Fnu4HI GCNGC 2 cut(s) 387, 499
FokI GGATG 2 cut(s) 41, 179
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 2 cut(s) 387, 499
FspBI CTAG 2 cut(s) 68, 146
FspI TGCGCA 1 cut(s) 109
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 387, 499
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 3 cut(s) 386, 479, 489
HapII CCGG 3 cut(s) 129, 390, 410
HhaI GCGC 1 cut(s) 110
Hin1II CATG 4 cut(s) 62, 157, 319, 454
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HpaII CCGG 3 cut(s) 129, 390, 410
HphI GGTGA 3 cut(s) 434, 485, 498
Hpy188I TCNGA 3 cut(s) 199, 292, 562
Hpy188III TCNNGA 4 cut(s) 316, 463, 513, 539
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 4 cut(s) 157, 244, 543, 567
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4V TGCA 3 cut(s) 54, 62, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpyF3I CTNAG 3 cut(s) 309, 537, 561
Hsp92II CATG 4 cut(s) 62, 157, 319, 454
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 3 cut(s) 9, 238, 412
LmnI GCTCC 4 cut(s) 335, 398, 459, 583
Lsp1109I GCAGC 1 cut(s) 510
LweI GCATC 2 cut(s) 63, 283
MaeI CTAG 2 cut(s) 68, 146
MalI GATC 3 cut(s) 11, 240, 414
MboI GATC 3 cut(s) 9, 238, 412
MboII GAAGA 3 cut(s) 28, 36, 554
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 2 cut(s) 356, 470
MnlI CCTC 9 cut(s) 50, 59, 79, 308, 318, 388, 450, 469, 556
MspI CCGG 3 cut(s) 129, 390, 410
MspR9I CCNGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 495
NciI CCSGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 153
NdeII GATC 3 cut(s) 9, 238, 412
NlaIII CATG 4 cut(s) 62, 157, 319, 454
NlaIV GGNNCC 1 cut(s) 490
NsbI TGCGCA 1 cut(s) 109
PagI TCATGA 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PkrI GCNGC 2 cut(s) 388, 500
Psp124BI GAGCTC 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 488
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 3 cut(s) 182, 227, 433
RsaNI GTAC 3 cut(s) 181, 226, 432
SacI GAGCTC 1 cut(s) 470
SatI GCNGC 2 cut(s) 387, 499
Sau3AI GATC 3 cut(s) 9, 238, 412
Sau96I GGNCC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 2 cut(s) 356, 470
SetI ASST 6 cut(s) 73, 140, 327, 372, 462, 470
SfaNI GCATC 2 cut(s) 63, 283
SfcI CTRYAG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 302, 463
SmoI CTYRAG 2 cut(s) 302, 463
SsiI CCGC 1 cut(s) 387
SspMI CTAG 2 cut(s) 68, 146
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 446
TatI WGTACW 1 cut(s) 225
TauI GCSGC 1 cut(s) 389
TscAI CASTG 1 cut(s) 248
TseI GCWGC 1 cut(s) 498
TspDTI ATGAA 2 cut(s) 276, 304
TspRI CASTG 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 2 cut(s) 68, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.