FvH4_6g12390

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007418
Physical Location & Seq
Forward (+)
7485052 .. 7486726
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12390.t1

Sequence Viewer

Length: 552 bp
ATGGCGGCCAAGCTTCCATTAGTTCTCTTCCTCTCTTCTCTCTTCATCCATGCAGCTCTAGCTGCTTTTGTGTGTGAGGATTTGCCGAATGACGTTTGCGCGTTTTCGGTGTCTTCTGCTGGGAAAAGATGTTTGATAGAAACCATGGCAAAGAACAATGGAAACGTAGAATACCAGTGCAGGACATCAGAGGTTATGGTTGAGGGGTTGGCCGAGTATATGGAGACAGATGAGTGTGTGAATGCTTGCGGTGTGGATAGAAAGTCCGTCGGAATTTCCTCCGACTCCCTTCTTGAGCCTCAATTTATGAGCAAGCTTTGCTCACCCAACTGTTACCAGAAATGCCCCAACATTGTTGAACTTTACTTCAACTTGGCTGCCGGAGAGGGAGTGTTCTTGCCTGATCTGTGTGAGAGACAAAGATCTAACCCTCACCGTGCCATGATTGAACTTATGAGCTCCGGCGAGGCTGCCCCTGGTCCGGTTACATCAGAAGACATGCATGCCGCCCAAAGCCCCTTTCCAAACGACATTGCTCCTTCTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

184

Amino Acids

19.82

Weight (kDa)

4.59

Isoelectric Point (pI)

64.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 24 - 169 2.6e-74 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AciI CCGC 3 cut(s) 5, 249, 507
AcoI YGGCCR 2 cut(s) 6, 210
AcsI RAATTY 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 3 cut(s) 359, 370, 449
AjnI CCWGG 1 cut(s) 475
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AluBI AGCT 5 cut(s) 13, 56, 62, 316, 459
AluI AGCT 5 cut(s) 13, 56, 62, 316, 459
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 2 cut(s) 218, 409
AoxI GGCC 2 cut(s) 6, 210
ApeKI GCWGC 4 cut(s) 53, 62, 377, 470
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 315, 425
AvaII GGWCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 461
BbsI GAAGAC 2 cut(s) 105, 501
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 4 cut(s) 49, 65, 364, 457
BciT130I CCWGG 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 218, 409
BfaI CTAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 422
BisI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
BlsI GCNGC 6 cut(s) 7, 55, 64, 379, 472, 508
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 477
BpiI GAAGAC 2 cut(s) 105, 501
BpuEI CTTGAG 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 144, 475
BsaWI WCCGGW 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 144, 475
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 4 cut(s) 49, 65, 364, 457
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 2 cut(s) 8, 212
BsiHKAI GWGCWC 1 cut(s) 461
BsiSI CCGG 3 cut(s) 381, 462, 482
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 218, 409
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 2 cut(s) 8, 212
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 2 cut(s) 403, 422
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 3 cut(s) 5, 249, 507
BspANI GGCC 2 cut(s) 8, 212
BspFNI CGCG 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 144, 475
BssMI GATC 2 cut(s) 403, 422
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 332, 437
Bst6I CTCTTC 3 cut(s) 32, 40, 47
BstAPI GCANNNNNTGC 1 cut(s) 318
BstC8I GCNNGC 3 cut(s) 247, 314, 504
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 406, 425
BstMAI GTCTC 2 cut(s) 218, 409
BstMBI GATC 2 cut(s) 403, 422
BstMWI GCNNNNNNNGC 3 cut(s) 59, 62, 318
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 2 cut(s) 502, 506
BstSCI CCNGG 1 cut(s) 475
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 4 cut(s) 49, 65, 364, 457
BstV2I GAAGAC 2 cut(s) 105, 501
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 2 cut(s) 8, 212
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 3 cut(s) 247, 314, 504
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 479
CviAII CATG 5 cut(s) 50, 145, 442, 499, 503
DpnI GATC 2 cut(s) 405, 424
DpnII GATC 2 cut(s) 403, 422
EaeI YGGCCR 2 cut(s) 6, 210
Eam1104I CTCTTC 3 cut(s) 32, 40, 47
EarI CTCTTC 3 cut(s) 32, 40, 47
Ecl136II GAGCTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 459
EcoICRI GAGCTC 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 5 cut(s) 53, 148, 445, 502, 506
FatI CATG 5 cut(s) 49, 144, 441, 498, 502
Fnu4HI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 100
GluI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
GsaI CCCAGC 1 cut(s) 123
HaeIII GGCC 2 cut(s) 8, 212
HapII CCGG 3 cut(s) 381, 462, 482
HhaI GCGC 1 cut(s) 101
Hin1II CATG 5 cut(s) 53, 148, 445, 502, 506
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HindIII AAGCTT 2 cut(s) 11, 314
HinfI GANTC 1 cut(s) 284
HpaII CCGG 3 cut(s) 381, 462, 482
HphI GGTGA 2 cut(s) 315, 425
Hpy188I TCNGA 4 cut(s) 190, 272, 283, 493
Hpy188III TCNNGA 1 cut(s) 293
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 299, 549
HpyCH4III ACNGT 2 cut(s) 332, 437
HpyCH4IV ACGT 2 cut(s) 93, 165
HpyCH4V TGCA 3 cut(s) 53, 180, 502
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 62, 318
HpySE526I ACGT 2 cut(s) 93, 165
Hsp92II CATG 5 cut(s) 53, 148, 445, 502, 506
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 403, 422
LmnI GCTCC 2 cut(s) 464, 541
Lsp1109I GCAGC 4 cut(s) 49, 65, 364, 457
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 93, 165
MaeIII GTNAC 2 cut(s) 332, 484
MalI GATC 2 cut(s) 405, 424
MboI GATC 2 cut(s) 403, 422
MboII GAAGA 5 cut(s) 19, 27, 34, 105, 506
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 2 cut(s) 273, 302
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 250, 306
MnlI CCTC 9 cut(s) 41, 70, 184, 196, 289, 309, 379, 441, 460
Mph1103I ATGCAT 1 cut(s) 504
MspI CCGG 3 cut(s) 381, 462, 482
MspR9I CCNGG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 1 cut(s) 477
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 59, 62, 318
NcoI CCATGG 1 cut(s) 144
NdeII GATC 2 cut(s) 403, 422
NlaIII CATG 5 cut(s) 53, 148, 445, 502, 506
NmeAIII GCCGAG 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 504
NspI RCATGY 2 cut(s) 502, 506
PaeI GCATGC 1 cut(s) 506
PctI GAATGC 1 cut(s) 247
PkrI GCNGC 6 cut(s) 7, 55, 64, 379, 472, 508
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 1 cut(s) 475
PspPI GGNCC 1 cut(s) 479
PsuI RGATCY 1 cut(s) 422
SacI GAGCTC 1 cut(s) 461
SatI GCNGC 6 cut(s) 6, 54, 63, 378, 471, 507
Sau3AI GATC 2 cut(s) 403, 422
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 461
SetI ASST 8 cut(s) 15, 58, 64, 96, 168, 195, 318, 461
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SphI GCATGC 1 cut(s) 506
Sse9I AATT 2 cut(s) 273, 302
SsiI CCGC 3 cut(s) 5, 249, 507
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 461
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 332, 437
TaiI ACGT 2 cut(s) 96, 168
TasI AATT 2 cut(s) 273, 302
TauI GCSGC 2 cut(s) 8, 509
TscAI CASTG 1 cut(s) 182
TseI GCWGC 4 cut(s) 53, 62, 377, 470
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 273
XceI RCATGY 2 cut(s) 502, 506
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.